Thermoanaerobacter wiegelii: Thewi_1201
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Entry
Thewi_1201 CDS
T01607
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
twi
Thermoanaerobacter wiegelii
Pathway
twi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thewi_1201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twi03019
]
Thewi_1201
Messenger RNA biogenesis [BR:
twi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thewi_1201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
HI0933_like
Motif
Other DBs
NCBI-ProteinID:
AEM78624
UniProt:
G2MT38
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All DBs
Position
1227827..1229491
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AA seq
554 aa
AA seq
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MAHKAKLKIIPLGGLNEIGKNMTVFEFGNDIIVVDCGLAFPDDEMLGIDLVIPDITYLLK
NREKVKAIVLTHGHEDHIGALPYVLKQLNVPVYGTRLTIGLVEYKLKEHGILKDSKLITV
KPREIVEIGQFKVEFIRTSHSIADSAALAIHTPVGTVFHSGDFKVDFTPIGGEIPDLHRF
AQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDSIFRKAEQRIIVATFASNIHRVQQI
IDSAHKYGRKVAISGRSMLNVVNVAMELGYLIVPDGLLIDIDEANKLPHDKVVIITTGSQ
GEPMSALTRMASSEHKKVEIVPGDTVIISASAIPGNEKLISRVINQLFKKGANVIYEALA
DIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRHLVQHAKLAETLGMPPQNIFVVDNGTV
LEFTKNSGRIAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISKETGGII
AGPDIISRGFVYVRESEDLMEESKNIVRDVLSKCEKEEVNEWATIKSMIKDNLSSFLYEK
TKRNPMILPIIMEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggcacacaaggcaaaacttaaaatcattcctttgggcgggttaaatgagattggcaaa
aacatgactgtttttgaattcggaaacgacattatagttgtggattgcggtctcgctttt
ccagatgatgaaatgttgggaatagatttggtcattcccgacattacttatttattgaaa
aatagggaaaaggttaaggcaattgttttaacacatggtcatgaagaccatattggagct
ttaccatatgtcttaaagcaacttaatgttcctgtatatgggactcgtctgactataggt
ttagtagaatataagttaaaagagcatggtattttaaaagacagtaaattgataacggtg
aagccaagagagattgtcgaaattggtcagtttaaagtggagtttataagaacctctcat
agcattgcagattctgcggctttagctattcatactcctgttgggacggttttccactcg
ggggatttcaaagtagactttacccctatagggggagaaataccagacttacaccgcttt
gcccagttaggggaaaaaggggtactagtaatgctatgtgatagtaccaatattgaaaga
ccgggttataccatgtcagaaaggacagtgggagagacttttgacagtatatttagaaaa
gcagaacaacgaatcatagtggcaacttttgcttctaacatccacagagttcaacaaatt
atagattctgcgcacaagtatggaagaaaggttgctatttcaggcagaagcatgttaaat
gtagttaatgtagcgatggaattaggctatttaattgttcctgatggccttttgattgat
attgatgaagccaataaattgccccatgataaagttgttattataacgacaggcagccaa
ggggaacctatgtcagctcttaccagaatggcttcttctgagcataaaaaagtagagatt
gtaccgggagatacagtgataatttctgcttctgctattccgggaaatgaaaaacttatt
tctcgcgtcatcaaccaattatttaaaaaaggtgccaatgtaatttatgaagcattggca
gatattcacgtatcgggtcacgcctgtcaagaagagattaagctacttcatacattaata
aaacctaaatttttcattcctgttcatggagaatacagacatttagttcagcatgctaag
cttgcagagactttaggaatgcctccccaaaatatctttgtagtagataatgggacagta
ttagagtttacaaaaaattctggaaggattgcaggaacagtaacagcagggaaagtgttg
gtagatggcttgggagttggagatgtagggaatatcgttttaagagatagaaaacatttg
gctcaagatggtttgttagtagtagtggttactatttctaaagagactggaggaattata
gcgggtcccgacataatttccagaggatttgtatatgtgagagaatcagaggatttaatg
gaggaatccaaaaatattgtcagagatgtgttatcaaagtgtgagaaagaggaagttaac
gaatgggctactataaaatcaatgataaaagacaatttaagcagcttcttatatgaaaaa
actaagagaaatcctatgatattgccaatcataatggaaatttaa
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