Thermoanaerobacter wiegelii: Thewi_2571
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Entry
Thewi_2571 CDS
T01607
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
twi
Thermoanaerobacter wiegelii
Pathway
twi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
twi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thewi_2571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twi03400
]
Thewi_2571
Enzymes [BR:
twi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thewi_2571
DNA repair and recombination proteins [BR:
twi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Thewi_2571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
DUF924
RecG_dom3_C
MFD_D3
ApoLp-III
IstB_IS21
UBA
Motif
Other DBs
NCBI-ProteinID:
AEM79896
UniProt:
G2MU69
LinkDB
All DBs
Position
complement(2606338..2609847)
Genome browser
AA seq
1169 aa
AA seq
DB search
MFTRQIEELKEIKTIEEFLQQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVE
ARKIYEDLYSFNFGNASLFPKREALFYKIDAASQEVVSQRLQVIKKLSEGSPHAVVTSID
AAVGKLIPMDLFKKYQFVFKLGDTVNLEEVIKNLVTMGYERVQMVEGKGQFSVRGGIIDV
FSPTEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAV
SNYLNSYLSKIKKSKSGIAEKLQQKFEEIMEEITESKRVENIHELIDYFYDDVYSIVDYM
GEEAVIILDESSRIKQRVNNLQMEFNENFKVLLEKGEVLPEQSKLFFDYEEILKRVKNNF
LLIMNTLAKPDNELQPQTIVNFVSRSMHPFHGKMDILVDDLKYYKNAGYKVLLLSGNQER
ARILKDTLDSFNIDTVVIKDSEYDIQKGQVVIYPASVSKGFEYVDAKFAVISDGEIFGQT
KRSKKTVKIRNADKIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGG
DTLFVPVEQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQ
MVKGHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE
VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKEFPVKIEMLSRFRTPKEQAQII
KGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSA
TPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVY
NRVNGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLD
IPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEF
TEFGSGFKIAMRDLEIRGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGEAPKEEIT
TTIDIKVNAYIDSSYIEDENLRLEMYKKIASIESREDMIEISEELVDRFGDYPKPVEALL
EIAYLKAIASQLYITEITEKGNVVILKFKDMESVNMEVIEKVIKEYGGNLMFSSQVQPYL
TYRFNKKETIQKELIELVEKIKSLQLVEK
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtttactcgtcaaatagaagaattaaaagagattaaaacaatagaagaatttctacaa
cagaggaaaggacctattttggcttatgggcttacagattctcaaaaagcccatattgcc
cattatataatgactaagtttaacaaaaaggtgttagttattgctcctgatgaggtggaa
gcaagaaaaatatacgaagatttgtattcttttaattttggcaatgcctctttatttccc
aaaagagaagccttgttttataaaatagatgctgcgagtcaagaagtggtgtctcagaga
ttgcaggtaattaaaaaattgtcagaaggaagtccccatgctgtagttacttctatagac
gcagcagtaggtaagctcatacctatggatttgtttaaaaagtatcaatttgtttttaaa
ttaggtgatactgtaaatttagaagaagttataaaaaatttggtgaccatggggtatgaa
agggttcaaatggtggaaggaaaagggcaatttagtgtgaggggaggaataattgacgtt
ttttcccctacagaagaatatccttataggattgaactttttgacgatgaaatagattcc
ataaggacttttgatgtgattacccaaaggtctttagaaaatattgataaaataaatatt
tttccagctacagagtttatcgcagaggcagagcacatcaaaaaggggatttcggcagtt
tcgaactatttaaattcctatttgtcaaaaataaaaaaatcgaaaagtggcattgcagaa
aagttacagcaaaaatttgaagaaattatggaggagattacagaatctaaaagggtggaa
aatattcatgagcttatagattatttttatgatgatgtctattctattgttgactatatg
ggagaagaggcagttattattttagatgaaagcagtcgcattaaacaaagggtaaataac
cttcaaatggaatttaatgaaaatttcaaggttttgttagaaaaaggagaggttttgcca
gagcaaagtaagcttttttttgattatgaggagatattaaaaagagtgaaaaataacttt
ttactcataatgaatactttagcaaagcctgacaatgaactacagcctcaaacaattgtt
aattttgtatcaaggtctatgcacccttttcacggcaaaatggatattttagtagatgat
ttgaagtattacaaaaacgcaggatataaagtattgcttttaagtgggaatcaagaaaga
gcaagaattttaaaagatacgcttgacagttttaatattgatactgtagtgattaaagac
agtgaatacgatatacaaaaagggcaagtggtcatatatcctgcctctgttagcaaggga
tttgagtatgtggatgcaaaatttgcagttataagcgatggagaaatttttggtcagact
aaaaggagcaaaaaaactgtaaaaattagaaatgccgacaaaataaagagctttactgaa
ttagaagtagggtcatatgttgtgcatgtaaattatggtataggaaagtatgaaggcata
gaaaaaataaaagtagatgggattataagggattatttaaaaataatttatgcaggggga
gataccctttttgtaccagtagaacaattagaccttgtgcaaaaatatgtggggcctaca
gacaatccacctaaattaaataaattagggggtagtgaatggcttagagcaaaaagaaaa
gccaaaaaagcagtagaagaccttgctaaggatttgatacaactttacgccaaaaggcag
atggtgaaaggacatgctttttctcctgatactccatggcaaaaggagtttgaagagcaa
tttccctatgaagagacggaagaccagttaaggtgtataaaagaaattaaagaggatatg
gaaaaagacaggccaatggatagacttctttgtggagatgtgggatatggtaaaacagaa
gtagctttaagggctgcctttaaagcggtggctgatggaaaacaggttgcttttttgtgt
cctacaactatcttggcttatcagcattatactaatttcatagaaagattcaaagaattt
cctgtaaagatagaaatgcttagccgttttaggactcccaaagaacaagcgcaaataatt
aaaggcctggctgaagggactatcgatattattgttggtactcacaggcttttacagaat
gacgtgaaatttaaagatttaggacttttaattatagacgaagaacagaggtttggagtt
gttcataaagagaaaataaaaaaacttaaggaaaatatagacgttttgacattgtcagca
actcctattcctagaactttgcacatgtccttgattggtataagggatatgagcgtattg
gagaatcctcctgaagacagatttccagtagaaacctatgtgatggaatttaatgaagaa
ttaataaaagatgctattttaagggaaattggaagagggggacaagtctattttgtttac
aatagagtaaatggcatagaaaagatggcttctttggtaaaagatttagttcctggttgt
agagtagctgtggctcatgggcaaatggaagaaagccaattagaaaaagtgatgattgac
tttctaaatggggaatacgatgttttagtaagtactacaataattgagacagggcttgat
ataccaaatgtaaatactattatagtttatgatgcggataagttagggctttcccaattg
tatcaattaagaggaagagtaggtaggtcaaatagacttgcttatgcctattttacctat
agaaaggataaagttttaagtgaagtggcggaaaaaaggttggaggcgataaaagagttt
actgaatttggttctggatttaaaattgccatgagagatttggagataagaggtgcagga
aatctccttggagcagaacaacatggtcatattaatgcaattggttatgacttgtattta
aagcttttagaggaggctatacggaatttaaaaggagaagctcccaaagaagagattact
accacaatagacataaaagtcaatgcttatattgactcttcctatattgaagacgaaaat
ttaagattagagatgtacaagaaaatagcctctatagaatctagagaagatatgatagag
atttcagaagagcttgtagataggtttggcgattatccaaagcctgtagaggcactattg
gaaattgcttatttaaaggctattgcctctcagctctatattactgaaataacggaaaaa
ggaaacgtcgttattttaaagtttaaagatatggaatcagtaaatatggaggttatagag
aaggtaataaaagaatatggagggaatttaatgttttcaagtcaagtacaaccatatctt
acttatagattcaataaaaaagagactatacaaaaggaacttattgaattagtagaaaaa
ataaaaagtttgcagttagtggagaaatga
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