Tripterygium wilfordii (thunder duke vine): 119980271
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Entry
119980271 CDS
T07256
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119980271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twl03400
]
119980271
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119980271
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
119980271
NCBI-ProteinID:
XP_038678833
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Position
16:3984688..3991625
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AA seq
941 aa
AA seq
DB search
MENFEEQNKLPELKLDAKQAQGFLSFFKTLPQDPRAVRLFDRRDYYTAHGEGATFIAKTY
YHTTTALRQLGSGSDGLSSVSVSKNMFETIARNILLDRTDHTLELYEGSGSNWRLVKSGT
PGNIGSFEDVLFANNEMQDTPVVVALYPSFRENGCTIGFGYVDLTKRVLGLAEFIDGSHF
TNVESSLVALGCKECLLPMESGKSNEYRTLHDVFTRCGVMLTERKRTEFKTRDLVQDLGR
LCKGSIEPIRDLVSGFEFAAGALSALLSYAELLADESNYGNYTVLRYNLDRYMRLDSAAM
RALNVLESKADANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAFV
EDTELRQDVRQHFRRISDIERLVHNLEKKRGGLHHIVKLYQSSIRLPYIKSALEKYEGQF
SSLIRERYLDPLEELTDDDHLNRFIALVEASVDLDQLETGEYMISSSYDPALATLKEKQE
SLECQIHNLHKQTANDLDLPMDKSLKLDKGTQFGHVFRITKKEEPKIRKKLTTHFIVLET
RKDGVKFTNTKLKKLGDQYQKILEEYKTCQKELVNRVVQTALTFSQVFDSLAGLISELDV
LLSFADLASCCPTPYTRPDITASDVGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSWF
QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLHGVST
FMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHF
HELTALAPENSVHELDMKQIIGVANYHVSAHIDTSNRKLTMLYKVEPGACDQSFGIHVAE
FANFPESVVALAREKAAELEDFSATAVVSNDDKEEVGTKRKRECNDDDMSRGAAQAHKFL
KEFSDMPLETMDLKQALEQISKLKDELKKDAGNCSWLQQFF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattttgaagaacagaacaagctccctgagctcaagctagatgctaagcaagcc
caggggtttctatcattcttcaaaaccctaccccaggacccaagggctgttcgactcttt
gatcgccgtgactattatactgctcatggtgaaggcgcaacattcatagcaaaaacatac
taccatactactactgctttgcgacagttaggtagtggatctgatggtctttcgagtgta
agtgttagcaagaacatgtttgaaactattgctcgtaatattcttttagatagaacagat
catactcttgagctctatgagggtagtggctccaattggcgacttgtgaaaagtggaact
cctggaaatataggcagttttgaagatgtgctatttgccaacaatgaaatgcaggatacc
cctgttgttgtggcattatatccgagtttccgagaaaatgggtgcactattggtttcggt
tatgttgacttaactaagagagtgcttggtttagccgaatttattgatggtagccacttt
acaaatgtggagtcatcacttgttgctcttggatgcaaggaatgtcttttgccgatggag
agcggaaagtctaatgaatatagaacattgcatgatgttttcaccagatgtggtgtgatg
ttgactgaaagaaaaaggaccgagttcaaaacaagagatttagtgcaggatcttggtagg
ctttgcaaaggttctattgagccaattcgtgatttagtttctggatttgagtttgcagct
ggtgctttaagtgcattactgtcctatgcagaattacttgcagatgagagcaattatggg
aattatactgtacttaggtacaatcttgacagatatatgaggttagactctgctgctatg
agggcactgaatgtccttgagagcaaagctgatgcaaacaagaatttcagtttatttggt
ctcatgaatagaacctgtactgctgggatgggaaaacggttgttgcatatgtggctaaaa
cagcctttattggatgtgaatgaaatcaactctaggctggatttggtacaagcatttgtg
gaggatactgagcttcgccaagatgtgaggcaacatttcagaagaatctcagatatcgag
cgtctggtacacaatcttgagaagaaaagaggtggtttacaccatattgtgaagctctat
cagtcaagcataagactaccatacattaagagtgccctggaaaagtatgaaggacagttt
tcatcattgatcagagaaaggtatttggatccacttgaagaattgactgatgatgatcac
ttaaataggtttattgctcttgtagaagcttctgttgaccttgatcaacttgaaactggg
gaatacatgatttcatcaagctatgaccccgcactagctacacttaaagagaagcaagag
tcactggaatgccaaatacacaatttgcacaaacaaactgcaaatgatcttgatctgcca
atggataaatcactgaagttagacaagggcacacaatttggacatgtcttcagaattacc
aagaaggaagaacctaaaataaggaagaagcttaccacccacttcattgtccttgaaact
cgaaaagatggagtgaagtttaccaacacaaaacttaaaaaattaggagaccagtaccag
aagatacttgaggagtacaagacctgtcagaaagagctggtcaatagagttgttcaaact
gcattaactttttctcaggtctttgactctttagctgggttaatctctgagttggatgtc
ttgcttagttttgctgatttggcttcttgttgtcctacgccgtatacaagaccagacatc
actgcatcggatgtgggggatattatattagaagggagtagacatccttgtgtagaagca
caagactgggtgaattttatacctaatgactgcaaacttgtccgaggaaaaagttggttc
caaataattacggggcctaatatgggtggaaaatctacatttattcggcaggttggtgtg
aacattcttatggcacaagtcggttcctttgttccttgtgacagagctagcatttctgtt
cgtgattgcatttttgctcgtgtgggtgctggtgactgtcaactacatggagtttctacc
tttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctactgataaatcattg
ataattattgatgaactgggacgtgggacgtcgacttatgatgggtttggtttagcttgg
gcaatttgtgaacatattgttgaagttatcaaagcacctactttatttgccacccacttt
catgaattgacagcattagcacctgaaaattctgttcatgagctcgatatgaagcaaatt
ataggtgttgcaaactatcatgttagcgcacacattgatacatcgaatcgaaagctgact
atgctttacaaggttgagccaggggcttgtgatcaaagttttggtattcatgttgcagaa
ttcgccaactttcctgaatctgttgttgcccttgcccgcgagaaggctgctgaattggaa
gatttctcagctactgcagttgtctccaatgatgataaagaagaggtcggaacaaaacga
aagagagaatgcaatgatgatgatatgtctagaggtgctgcacaggctcacaagttcttg
aaagaattctctgatatgccattggagacgatggatttgaagcaggctctggaacaaata
agcaagttgaaggatgagttaaagaaggatgcaggaaactgtagctggcttcagcaattc
ttctaa
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