Tripterygium wilfordii (thunder duke vine): 119980910
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Entry
119980910 CDS
T07256
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03013
Nucleocytoplasmic transport
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119980910
03015 mRNA surveillance pathway
119980910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119980910
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119980910
5.6.2.5 RNA 5'-3' helicase
119980910
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119980910
mRNA cycle factors
Common to processing body (P body) and stress granule
119980910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
119980910
NCBI-ProteinID:
XP_038679673
LinkDB
All DBs
Position
16:complement(8398246..8411981)
Genome browser
AA seq
1272 aa
AA seq
DB search
MDSQQINLYETASQPDTGTDAYTFLEFNTQGESDFDYPEFQSQVAWPTPSDSLAASDHRG
GTSVSSDHHSESPVVSPVSASTAKGGGRGGGVGSGGNSSNGTSAVEALAAGMRGLNFEET
GDDEGYEFGKGEFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHILNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQMNKVEELWKTNPDASLEDLEKP
GVDDEPQPVAIKYEDAYQYQNVFAPLIKLEADYDKTMKESQSKDNVTVRWDIGLNKKRIA
YFVFPKEDNELRLVPGDELRLRFSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPID
VNHGLSVDFVWKSTSFDRMQRAMKTFAVDETSVSGYIYHHLLGHEVEVQLVRNTLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQAT
EPECLIPLVLGAKQVILVGDHCQLGPVIMCKKAARAGLAQSLFERLVMLGVKPIRLQVQY
RMHPSLSEFPSNNFYEGTLQNGVTINERLSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFLGGPGIVPNDNFGSS
ASSTPNADRRSSRARGSYMPPGPPNGTHKPGVHPAGFPMPRVPIPPFHGGPPSQPYAIPT
RGAVHGPVGAVPHVPPAGSRGFGAGRGSAGAPIGSHLPHQQGTQQTIGNVGTNFNFPAHE
NPNSQPSVGAPLSQPGYVNNMSVQGQSQTFQDGFSILHMSQDFLGDDFKSQGSHVPYNVA
DFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQGLF
TQVGFNDPSQDDSSRNHYGVANPSPLQSQGLMNSLYSQPFAHYNAQTLNLQAPQQQPQQG
QGSQNQNLHYNG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggattcacagcagattaacctctatgagactgcgtcgcagcccgacacaggcaccgat
gcctacactttccttgaattcaatacacagggcgaatccgacttcgactaccccgaattc
cagtcccaggtggcctggcccacgccctctgattctctcgccgcctctgaccaccgtggg
ggcacatcagtatcgtccgatcaccactctgagtccccggttgtgtctcctgtctccgcg
tccactgcgaagggtggtgggcgcggtggaggtgtaggatcaggcgggaacagcagtaac
gggaccagtgcagtggaggctctagcggctgggatgagagggttgaattttgaggagact
ggggatgacgagggatatgagttcggaaagggggaattcactgagcatgcctgtaggtat
tgtggcgtgtcgaaccctgcctgtgtggttcggtgtaacgttccatcttgccgcaaatgg
ttctgcaattcaagagggaacacgtctggctcgcatattctgaatcacctagtccgagca
aagcacaaggaagtttgtctccacaaagacagtcctttgggggaaactattcttgaatgc
tacaattgcggatgccggaatgttttccttcttggatttatttcagctaaaacagagagt
gttgttgtccttctttgcagagagccttgcttgagtgtcaatgcattaaaggatatgaat
tgggacctgagtcagtggtgtccccttatcgatgatagatgttttctgcagtggcttgta
aagatcccatccgaacaggaacagttgagggcacgccaaattagtgcccaacaaatgaac
aaggtagaggagctttggaagacaaatcctgatgcttccctcgaagaccttgagaagcct
ggggtggatgatgagcctcagcctgttgccataaaatatgaagatgcatatcagtatcaa
aacgtatttgctccgctaattaagcttgaagctgactatgataaaacgatgaaagaatct
cagagtaaggacaatgtcacagttcgatgggatatcggtcttaacaaaaagcgtattgcg
tactttgtatttccgaaggaagacaatgagttgcgcctcgtacctggtgatgagctgcga
ctgcgtttctctggagatgcagctcatcctgcttggcagtctgttggccatgtgatcaag
ctaactgcacaagaggaggtagctcttgagcttcgtgctaatcagggagttcctattgat
gtgaaccatggtttgagtgtcgattttgtatggaagagtacaagctttgacaggatgcaa
agagctatgaaaacttttgcggtagatgaaacgagtgtcagtgggtatatatatcatcat
ttgttgggccatgaggttgaggttcaactagttcgtaatactctacctcgtcgttttggt
gctccaggcctccctgagttgaatgcttctcaggtttttgctgtgaaaagtgttcttcag
aagcctatcagtctgattcaaggaccacctggcacggggaagactgtcacttctgctgca
attgtttatcacatggctaaacagggccagggacaggttctggtttgtgccccaagtaat
gtggctgtagaccagttagctgagaaaataagtgccactggcttaaaggttgtcaggctt
tgtgcaaaatcaagggaagctgtgagctcccctgttgagcatctgaccctccactatcag
gtccgtcacctcgatacatctgaaaagagtgaacttcacaagttgcaacaactgaaagat
gaacaaggagaactgtcaagcagtgatgagaaaaagtacaaggcactaaagcgagctaca
gagagggagatttctcaaagcgcagatgtgatttgctgcacttgtgtgggtgctggagat
cctcgattgtctaattttaggttccgccaggtactaattgatgagtctactcaggcaacg
gaacctgagtgtcttattcctttggttcttggggcaaagcaggttattcttgttggtgac
cattgccagcttggtccagtcatcatgtgcaagaaagcagcacgtgctgggctagctcag
tctctctttgaacgccttgttatgctaggtgtcaaaccaattaggctgcaggttcaatac
agaatgcacccatctctgtcagaattcccttctaataacttttatgaaggtaccctgcaa
aatggagttacgataaatgaaaggctatcatcaggcattgatttcccgtggcctgtgcct
aatcgtcccatgtttttctatgtccagatgggacaagaagaaataagtgccagcgggaca
tcctacttaaatcgtactgaggctgcaaatgttgaaaagattgtaaccacctttttgagg
agtggtgtagtacctagtcagattggggtgataacaccatacgaggggcagagagcatat
attgtaaactatatgtccagaaatggtgctctcaggcagcagctttacaaggaaattgag
gttgcaagtgtcgattcatttcaaggaagggaaaaagattacattattttgtcttgtgtg
aggagtaatgaacatcagggcattggatttcttaatgatcctcgtaggctgaatgtggca
ttaacacgtgcacgatatggtattgtcattcttgggaaccctaaagttctaagcaagcag
ccgttatggaatggcttgttgactcactataaggagcatgagtgcctggttgaagggcct
ttaaataacttgaagcagagtatggttcaatttcaaaagcccaaaaagatctacaatgac
aggagacttttctttcttggtggacctggtattgtacctaatgataactttgggtccagt
gcatcatctaccccaaatgctgatagaagaagcagtcgtgctaggggttcctatatgcca
cctgggcctcctaacggtacccacaagcctggagttcatcctgctgggtttcctatgccc
cgtgttccaattccaccatttcatggtggtccaccttctcagccatatgctattccaaca
cgtggagctgtgcatggaccagttggagctgttcctcatgtccctccagctggaagtcga
gggtttggtgctgggcgtggcagtgctggtgctcccataggcagtcatcttcctcaccaa
caaggcacacagcaaaccattggaaatgttgggactaatttcaattttcctgcccatgag
aatccgaatagtcagccatcagttggagctccattgtctcagcctggttatgttaacaat
atgtctgttcaaggtcaaagccaaacatttcaagatggattttcgattttacacatgtct
caggacttcttgggtgatgacttcaagagccagggatcacacgttccttataatgttgct
gatttttcaactcaggcttctcagagtggatatgctgttgattatgttacacaaggagca
caaggtggttttccgggaaacttcctcaaccagaattctcaagctggatactcccgattt
ggctctggaaatgattttatgtcccaggactacatgactcatggatcacaagggctcttc
actcaggttggctttaatgacccctcgcaagatgattcgtcgcgaaaccactatggtgtg
gccaatcccagtccgcttcaatcccagggcttgatgaattctctttactcccagcctttt
gcccattacaacgcgcagacactgaacttgcaggctccacaacagcagcctcagcaaggt
caaggctctcaaaaccagaaccttcattacaatggttaa
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