KEGG   Tripterygium wilfordii (thunder duke vine): 119981171
Entry
119981171         CDS       T07256                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
twl  Tripterygium wilfordii (thunder duke vine)
Pathway
twl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:twl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    119981171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:twl03021]
    119981171
Enzymes [BR:twl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     119981171
Transcription machinery [BR:twl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     119981171
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 119981171
NCBI-ProteinID: XP_038680145
LinkDB
Position
16:606238..622797
AA seq 1751 aa
MQQQRPLSLSLLVLESLSEPFVERESSEDAVILGVTILVLEMEDSTSSSILEGAITGIKF
GLATRQEICTASISDCPISHSSQLSNPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPI
PIYHPSHVSELKKMLSLLCLNCLKIRNNKIKSDSISGRLLSSCCEDAPQISICEVNTTDG
SSFLELKLPSKSRLKDGFWNFLEKYGFRYGGNVTRALLPCEVMEILKRIPNESRKKLVGK
EFFPQEGYIMQYLPVPPNCLSLPEVSDGATVTASDPSISMLKKVLKQVEIIKSSRSGTPN
FESHEVEFHDLQSAVNQYLQVRGTVKASRDADTRFGIKKESDNSSTKAWLDKMRTLFIKK
ASGFSSRSVISGDAYKGVNEIGIPSEIAQRITFEERVNLHNLNYLQEMVDNNLCLTYRDG
SSTYSLREGSKGHTFLRPGQVVHRRIMDGDYVFINRPPTTHKHSLLALKVYVHDDHTVKI
NPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFAVDKQLLSSHNGKFNLQLATDAILS
LKLMFKKYVFDKAAAQQLAMFVPNVLPQPALFKGNSFGPLWTAMQILQSAMPSYFDRYDV
DLSQEAVQPLFNEFVTSIFFEKGPKAVLSFFDSLQPLLMESLYAEGFSIGLEEFSMPREA
VERLELSVWGDLIDLKSISAVNKVVQQIGLLGLQLADKGKLYSKTLAEDMASHFERKIPF
DRDQSTKNGFIKSCFFHGLNPFEAMVHSISTREVMVRSSKGLSEPGTLFKNLMAILRDVV
ICYDGTVRNVCSNSIIQFEYGVKLGTKSESLFPAGEPVGVLAATSMSNPAYKAVLDSSPS
SNSSWELMKEILLCKVGFKNDVIERRIILYLNDCGCGKKYCRERAVYLVKNHLKKVSLKD
IAVDFLIESQQRSESFDVDTFLVGHIHLNKKLLKEMNVNVSEVLQKCQDTANLYHRKKKV
GQLFKKTILTVSECCSCQQCCRDEFSSTPCLMFFLQALRDIPLEKTSYFLADIIYPVLLE
TVIKGDPRICSANIVWVSPETTTWIRNPARTRQGELAMDIVLEKSVVKQSGEAWRIVMDS
CLPILHLIDTTRSVPYAIKQVQELLGVSCAFDQAVQRLSTSVTMVAKGVLKEHLILLANS
MTCAGNLVGFNSGGYKALSRSLNFQAPFTDATLFTPKRCFERAAEKCHVDSLKSIVASCS
WGKHVAVGTGSRFDIVWNTRECLLQDELNQKDIIDVYDFLHMLRGSTNGDESINSCLGEE
IDDLMGDEAAEWSLSPEHNPGYDKPSFEDMAEQELSDNEKAQPRDSESGAWESKTLAKTD
EAGWGNEAARDSAPSDWISWQEKGAKKLMEDPPEQGLGDADKAEPWGDRSRAWESTSMPK
TDESSDWTSWGKKEAEKQNEEPPEQGLGNADKAEPWVGRSGAWESTSMHKAEEAGDWNSW
GEKGAEKRKDAPPEQELGDTDNPEQWGHRSGAWETRSVRKSDEASWGEKGAEKQKDAPPE
QELGDTDNPEQWGHRSGARETRSVRKSDEASWGNEVRHDSASGKTEEDWARIVNDGESRK
SSAWDEMVNQDQSTCLWTSDGSNWKNKSRPLKSPRITKDNPGISGLFTATRQRLDMFTSD
EEKILSDIEPLMQSIRRIIHQSGYNDGDPLSADDQSYILKKVFEYHPDKAVKMGTGIDYL
MISKHTTFQESRCFYIVSIDGHKQDFSYRKSLDNLVRGKYPDLAEEFIAKYFRKPVGGGN
RERNVQKESEN
NT seq 5256 nt   +upstreamnt  +downstreamnt
atgcaacagcagcgaccactctctctctctcttctggttcttgaatctctctccgaaccg
tttgtagagagagaaagctcagaagacgctgtcattttgggtgtgaccattcttgttttg
gagatggaagatagtacttcatcatctattttggaaggggcgataacaggaatcaaattt
ggtttggcaacacggcaggaaatatgtacagcatcaatcagtgactgccctatcagccac
tctagtcagttatcgaaccccttcctcgggttgccccttgaatttggtaaatgtgagtct
tgtggcacttctgaaccaggaaaatgtgaaggtcattttgggtatattgaattacccata
cccatatatcatcctagtcatgtcagtgaactaaagaagatgttaagcttgttgtgcttg
aattgcttaaagatcagaaacaacaagataaagagcgatagcattagtggaagactgcta
tcttcatgctgtgaggatgctccacaaatttccatttgtgaagtaaacacgacagatggt
tcttcttttttggaattgaagttaccctctaagtcaagactaaaggatggattctggaat
ttcctggagaagtatggtttccgctatggtggcaacgtcactcgagcattgcttccttgt
gaggtgatggaaattcttaaaagaattccaaacgaaagtcggaaaaaactagtgggaaag
gaatttttccctcaagagggatatatcatgcaatacttgcctgtccctccaaattgctta
tctttgccggaagtgtctgacggtgctacagttacagcctcggatccatctatatcaatg
ctcaagaaagtcttgaagcaagttgaaatcatcaagagttcacggtctggtacgccaaac
tttgagtcacatgaagttgaatttcatgatttacaatcagctgtaaatcagtatcttcaa
gtgcggggcacagtgaaagcatcacgagatgcagatacgagatttgggatcaagaaagaa
tctgacaattcttcaaccaaggcgtggttggacaaaatgaggacattgttcattaaaaag
gcttctggattttcctctcgtagtgtgatttcaggtgatgcatataaaggtgtcaatgaa
attggtataccatctgaaattgcacagaggattacatttgaggaaagagtgaatctgcac
aaccttaattacttgcaagagatggtggataacaatttgtgccttacttacagagatggg
tcgtccacctattcactgcgggaaggttctaaggggcacacatttcttaggccaggtcaa
gttgtgcatcggcgaattatggatggtgactatgtatttataaataggccgcccacgact
cataagcactcccttctagcactcaaagtttatgtgcatgatgaccacactgtaaagatt
aaccctcttatttgtgggcctttgagtgcagattttgatggagactgtgtgcaccttttc
tatccccagtctcttgctgcaaaagctgaagttctggagctttttgcggtggacaagcag
ttgctcagctcccacaatggcaagtttaacttgcaacttgccacagatgcaattttatcg
cttaagttgatgtttaagaagtacgtttttgacaaagctgctgcccagcaactggcgatg
tttgttccaaatgtcttgccacagcctgctttgttcaaaggtaacagttttgggcctctt
tggactgctatgcagattctgcaatcagctatgccttcatactttgaccgttacgatgtt
gatctcagtcaggaggctgtgcaacctttgtttaatgaatttgtgacctccattttcttt
gagaagggtccaaaggctgtcctgagcttttttgactcgttacagcctttgttaatggag
agtttgtatgctgaaggctttagtatcggcttggaagaattttcaatgccgagggaggct
gtagagcgactggaattatctgtgtggggtgatttaattgacctcaagagcatttctgcg
gtcaacaaggtggtgcagcaaattggcttacttggtctgcaacttgcggataagggaaaa
ctttattctaagacattggcagaggacatggcctctcattttgaaagaaagattcctttt
gacagagaccagtctacaaagaatgggtttatcaagagctgtttcttccatggactaaat
ccatttgaggcgatggtgcactcaatttcaacaagggaagttatggtccgctcttctaaa
ggattatccgagccaggaaccttgtttaaaaacctgatggctatccttcgggatgttgtc
atctgttatgatggcactgtcagaaatgtgtgcagcaattccattatccaatttgaatat
ggggtgaagctgggaaccaagtcagagagtttattccctgctggcgaacctgttggtgtg
ctggctgcgacttcaatgtcaaatcctgcttacaaggctgttcttgattctagtccaagt
agcaattcttcatgggaattgatgaaggaaatactgctttgtaaagtcggatttaagaat
gatgttattgagcggcgcataattttgtatttaaatgattgtggttgtgggaagaagtat
tgcagagaaagagcagtctacttggtgaaaaatcatctgaaaaaagtcagtctcaaagat
attgctgttgacttcttgattgagagccagcagagatctgaaagttttgatgttgatact
ttccttgttggtcatattcatctcaacaagaagctgttaaaagagatgaacgttaatgtg
tctgaggttcttcagaagtgccaagatactgcaaatttataccaccggaagaagaaagtt
ggtcagctatttaaaaagacaattctcactgtcagtgaatgctgctcttgccagcaatgc
tgcagagatgagttctctagtacaccatgtttgatgttcttcttgcaagctttaagggat
atccctttggagaaaacatcgtacttccttgctgatatcatttaccctgttcttttggaa
acggtcattaaaggcgaccctcggatttgctcggcaaatatagtttgggtcagtccagaa
acaacaacttggataagaaatcctgccaggacacgacagggtgaattagcgatggatatt
gttctcgagaaatcagttgtcaagcaaagtggtgaagcttggaggatagtcatggattca
tgtctccctattcttcatttaattgacaccactcgctcggtcccatatgcgataaagcaa
gtacaggaattgcttggagtttcatgtgcatttgatcaagcagttcagcgcctttcaaca
tccgtgacaatggtggccaaaggtgttctcaaagagcatctaatcctcttagcaaacagc
atgacttgtgcaggaaatttggttggcttcaattctggtggttataaggcactttcacgc
tccttgaatttccaagcaccatttactgatgctacgctgtttacaccaaaaaggtgcttt
gagagagctgctgagaagtgccatgttgattccctaaaaagcattgttgcatcttgttct
tggggtaaacatgtggcagttggtacaggatcgcgatttgatatcgtttggaacacaaga
gagtgtcttttgcaggatgaattgaaccaaaaagatatcattgatgtttatgacttcctt
cacatgttgcgaggttccacaaatggagatgagtcgattaattcatgtttaggtgaagaa
attgatgatctgatgggggatgaagctgctgagtggagcctttctccagagcataatcct
ggttacgataaaccctcttttgaggacatggctgaacaagaattaagtgataatgagaaa
gcccaaccacgggatagtgaatctggtgcttgggaatctaagactctggccaaaactgat
gaagctggttgggggaatgaagcagctcgtgattctgctccaagtgactggatcagttgg
caagaaaagggagccaaaaaactaatggaggacccccctgaacaaggattgggtgatgct
gacaaagcagaaccatggggtgatagatctagggcttgggaatcgaccagcatgcctaaa
actgatgaatccagtgactggaccagttggggaaaaaaggaagctgaaaaacaaaatgaa
gaaccccctgaacaaggattgggcaatgccgacaaagcagaaccatgggttggtagatct
ggggcctgggaatccacaagtatgcataaagcggaagaagcaggtgactggaacagttgg
ggggaaaagggagccgaaaaacgaaaggacgccccccctgagcaagaattaggtgatact
gacaacccagaacagtggggtcatagatctggtgcctgggaaactagaagtgtgcgcaaa
agtgatgaagctagttggggggaaaagggagccgaaaaacagaaggacgccccccctgag
caagaattaggtgatactgacaacccagaacagtggggtcatagatctggtgcccgggaa
actagaagtgtgcgcaaaagtgatgaagctagttggggaaatgaagtacgtcatgattct
gcttctggaaaaactgaagaagactgggccagaattgtgaatgatggtgaaagtagaaaa
tcatctgcctgggacgagatggtaaatcaggatcagtcaacatgtctttggacttcggat
ggtagtaactggaaaaacaagagccgaccgctgaaatctcctaggattacgaaagacaat
ccaggcattagtggattatttactgctacgagacaacggcttgatatgtttacttctgat
gaggaaaaaatcctctcagatattgagccacttatgcagtctatcagaagaataattcat
caatctgggtacaatgacggagatccactttcagctgatgatcagtcctatatacttaaa
aaggtgtttgagtaccacccggataaagctgtgaagatgggcactggcattgattatctc
atgattagcaagcacaccactttccaggagagcaggtgcttctacattgtctccattgat
ggtcacaagcaggacttttcctatcgtaaatctcttgacaatcttgtaagggggaagtat
cctgacttggccgaagaattcatcgcaaagtacttcagaaaacctgttggtggagggaac
agagagcggaatgttcagaaggaatctgaaaactag

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