Tripterygium wilfordii (thunder duke vine): 119981769
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Entry
119981769 CDS
T07256
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119981769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
twl03041
]
119981769
03009 Ribosome biogenesis [BR:
twl03009
]
119981769
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119981769
Spliceosome [BR:
twl03041
]
Complex A
U2 snRNP components
U2 related factors
119981769
Complex B
119981769
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119981769
Ribosome biogenesis [BR:
twl03009
]
Eukaryotic type
90S particles
Helicases
119981769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
SRP54
FtsK_SpoIIIE
AAA_30
AAA_33
T2SSE
PhoH
TsaE
AAA_24
Motif
Other DBs
NCBI-GeneID:
119981769
NCBI-ProteinID:
XP_038680819
LinkDB
All DBs
Position
17:complement(12999325..13004093)
Genome browser
AA seq
724 aa
AA seq
DB search
MGTERKRKVSLFDVVDETTVSKISKSNGGVTAMNNSGVNNLVNPWTGKPYSQRYYEILEK
RTTLPVWHQKEEFLQVLKANQVLVLVGETGSGKTTQIPQFVLDAVEIETPDRRKKMMIGC
TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSRTVLKYLTDGMLLREAMTDPL
LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLM
KVPGRLHPVEIFYTQEPERDYLEAAIRTIVQIHLCEPPGDILVFLTGEEEIEDACRKIIK
EIANLGDQVGPVKAVPLYSTLPPAMQQKIFDPAPPPLNEGGPPGRKIVVSTNIAETSLTI
DGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSF
NNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DDGNLTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPKEAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFINHRTLKAADNVRQQLVRIMAR
FNLGLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLENFPQCEAKRKLEKLYKKREEN
KSKK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagagaggaagaggaaagtgagcttgttcgatgtggtggacgagactacggtc
tcaaagatttcgaagtctaacggtggggttacggcgatgaacaacagcggcgtcaataat
ctggtaaatccgtggactgggaagccgtattcccagaggtactatgagatcctggagaag
aggacgactctacctgtttggcaccagaaagaagagttcttacaggtgttgaaggccaac
caggtccttgtacttgttggtgagactggcagcggcaagacaacacagattcctcagttt
gtcttggatgctgtggagatagaaactcctgataggcgcaagaaaatgatgattggatgc
acacaacctcgtagggtggctgcaatgtccgtctcaagacgtgttgctgaggagatggat
gtaactattggggaagaagttggttatagcattcgttttgaggattgtagcagttcaaga
acagttttaaagtatcttactgatggtatgcttctaagggaggcaatgacagatccgttg
ttggaacgttataaagtgatagttcttgacgaggctcatgaaaggactttggcaactgat
gttctgtttggcttgctgaaggaagtgttgaagaatagacctgacttgaagctagttgta
atgagtgctactctcgaggcagaaaagtttcagggatattttaatggcgcacctcttatg
aaggttcctggtaggcttcacccagtggagatattctacacccaggaacctgaaagggat
tatcttgaggctgcaattaggactattgttcagatacacttgtgtgaacctccgggagac
atacttgttttccttactggagaagaggagattgaagatgcatgccgaaaaatcattaag
gaaatagcaaatttgggggaccaggtggggcctgtgaaagctgtgcctttgtattcaact
cttcctccggctatgcagcagaaaatatttgaccctgctcctcctccactaaatgagggt
ggtcccccgggaagaaagattgtggtgtcaacaaatattgcagaaacttctttgaccata
gatggcattgtttatgttattgaccctggtttttctaaacaaaaagtctataatccgcgt
gtgcgtgttgaatctttattggtgtctccaatatcaaaggcaagtgcacatcagagatca
gggcgtgctggaagaactcagccaggcaaatgtttcagactttacactgagagaagtttc
aataatgatctccagccacagacctatccggaaatattgcgttcaaaccttgctaacact
gttctcaccttgaaaaaactaggaattgatgatctggtgcattttgattttatggatcct
cctgctcctgagacattgatgagagcactagaggttttgaattacttgggagcattggat
gatgatgggaacttgacaaagttaggggaaataatgagtgaatttcctttagatcctcag
ttgtcaaagatgctcgttgttagtcctgaattcaactgttcaaatgagattttgtcaatt
tcagctatgctttcagtacccaattgctttgtccggcctaaggaggcacaaaaagctgct
gatgaagcgaaagcaagatttgggcacattgatggggatcaccttactcttctgaatgta
taccatgcatacaagcagaacaatgaagatccctcttggtgctacgaaaacttcatcaat
cacaggaccctgaaggctgcagacaatgttagacaacagcttgtccgtatcatggctagg
tttaacctcgggttgtgcagcactgatttcaacagccgtgattactatgtcaatataagg
aaggccatgcttgcgggatatttcatgcaggtagctcacttggaacggacgggacactac
ttaactgtgaaagacaaccaagtggtgcatttgcatccttcgaattgcctggatcataag
ccagagtgggtcatttataacgagtatgtcctcactagcaggaattttatccgtactgtg
acagatatccgtggtgaatggttggttgatgtggcatcacattactatgaccttgagaac
ttcccccaatgtgaagctaagcggaaacttgagaagctttacaagaagagggaggagaac
aagagcaaaaaatga
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