Tripterygium wilfordii (thunder duke vine): 119982697
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Entry
119982697 CDS
T07256
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119982697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119982697
03036 Chromosome and associated proteins [BR:
twl03036
]
119982697
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119982697
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119982697
mRNA degradation factors
5'-3' decay
Decapping complex
119982697
Chromosome and associated proteins [BR:
twl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119982697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Aldedh
Motif
Other DBs
NCBI-GeneID:
119982697
NCBI-ProteinID:
XP_038682124
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All DBs
Position
17:3947160..3956064
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AA seq
520 aa
AA seq
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MNNNNRGRYPPGIDVGRGGGVNTNSNFQSRTPQQQQQQQYVQRNYVHNHQQFQQQQQHHH
NQQQQQHHPHNQQQHYHNQQQLHHQQQQQWLRRGQLPGADAVVDEVEKTVQSEAVDPSSQ
DWKASLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIA
LTGSDILARAKNGTGKTAAFCIPALEKIDLENNVIQVVILVPTRELALQTSQVCKELGKH
LKIQVMVTTGGTGLKDDIMRLYQPVHLLVGTPGRILDLAKKGICILKDCSMLVMDEADKL
LSPEFQPSIEQLIRFLPASRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQ
FYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQD
HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL
GLAVNLITYEDRFNLYRIEQELGTEIKQIPPHINQEIYCR
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatagagggaggtatccacccgggatcgacgtcgggcgtggtggaggg
gtgaatacgaactctaacttccagtcgaggacgccgcagcagcaacagcaacagcagtac
gtgcagaggaattacgtgcataatcaccagcaatttcagcagcaacagcagcaccatcat
aatcagcagcagcagcagcaccaccctcataatcaacagcagcattatcataatcagcag
caactgcatcatcaacagcaacaacagtggctgaggaggggccagttacctggtgcagat
gccgtggtggatgaggttgaaaagaccgtgcagtctgaggccgttgacccgagctctcaa
gattggaaggcaagcctgaagataccaccagctgatacacgctacagaacagaggatgtg
acagccaccaaaggaaatgaattcgaggactattttttgaagcgtgagctgcttatggga
atatatgagaagggttttgaaaggccttccccaattcaagaagaaagtattcctattgct
cttactggtagtgatatacttgcgagagccaaaaatggtacagggaaaacagctgcattt
tgcattcctgccttggaaaaaattgacctagaaaacaatgttattcaagttgtcattctg
gttcccacgcgagagctggctcttcagacatcacaagtttgtaaggagcttggaaagcat
ttgaaaattcaagttatggttaccaccggtggtaccggtctgaaggatgatattatgcgt
ttatatcaaccagtacacttacttgttgggacacctggaagaatactagatctcgcaaaa
aagggcatttgtattttgaaagattgctcaatgcttgttatggatgaggctgataagctt
ttgtctccagagtttcaaccgtcaatagaacagctgattcgatttcttcctgctagtcgt
caaattttaatgttttcagctacatttcctgttactgtcaaggactttaaagatagatat
cttcagaagccttatgttattaatcttatggatgagcttactctcaagggtatcacccag
ttctacgcttttgtggaagaaagacagaaagttcactgcctaaacactcttttttcaaag
ctgcaaataaaccaatcaatcattttctgtaactcagtaaatcgggtagaattgttggct
aagaagattacagaacttggctactcttgtttctatattcatgcaaagatgctccaagac
catcgcaacagagtatttcatgacttccgcaatggtgcttgcagaaacttagtttgtact
gatctatttaccagggggatagacattcaagcagtgaatgtcgttattaacttcgatttt
ccaaagaactcagaaacatacctgcatagggttggtcgatctggaaggtttggacaccta
gggttggctgtgaatttgatcacctatgaggaccgctttaacttgtacaggatcgagcaa
gagcttggtaccgaaattaaacaaattcctccacatattaatcaggaaatttattgccgt
taa
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