Tripterygium wilfordii (thunder duke vine): 119983806
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Entry
119983806 CDS
T07256
Name
(RefSeq) sm-like protein LSM7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119983806
09123 Folding, sorting and degradation
03018 RNA degradation
119983806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119983806
03041 Spliceosome [BR:
twl03041
]
119983806
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119983806
mRNA degradation factors
5'-3' decay
Lsm complex
119983806
Spliceosome [BR:
twl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119983806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
119983806
NCBI-ProteinID:
XP_038683459
LinkDB
All DBs
Position
18:9070637..9074887
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AA seq
158 aa
AA seq
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MHKHCCALKDSGVRSKVQTLSFAIKSGKRREGESRASFFFAFSCYCSRVFVPLILVSVKM
SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTT
DQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQQDGA
NT seq
477 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaacactgctgtgcccttaaagactccggagtccggtccaaagtccaaacactc
tccttcgccatcaaaagcgggaaaaggagagagggagaatctagggcatctttcttcttc
gcgttctcctgttactgttcgagggtttttgttccgctcatcttggtctcagttaagatg
tcgggcaggaaagaaactgttttggatttggcaaagttcgttgacaagggtgttcaagtc
aagctcactggtggtagacaagtcacagggactctgaagggatatgatcaattactgaac
cttgtcctcgacgaagctgtagaatttctaagagatccagatgatccattgaagactacg
gatcagactagacgtcttggtttaatagtgtgtaggggaactgctgtgatgcttgtttca
ccaactgatggtacggacgagattgctaacccttttgtccagcaagatggggcgtag
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