Tripterygium wilfordii (thunder duke vine): 119985299
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Entry
119985299 CDS
T07256
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119985299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119985299
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119985299
mRNA degradation factors
5'-3' decay
Decapping complex
119985299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
NAD_binding_11
DUF445
Motif
Other DBs
NCBI-GeneID:
119985299
NCBI-ProteinID:
XP_038685485
LinkDB
All DBs
Position
19:complement(268469..275725)
Genome browser
AA seq
1337 aa
AA seq
DB search
MAASSNPNQVPTTPIPQYDGHGFYKPSPPQPNTTYPPPQQQPFHFPNYPQNHPLQNHHNN
LPQRSLSYPTPPFQPFPNSGGAQIMALLRTPSSSSNPESTVPFTAPVTEYSTGLVGPPRM
PSNKVPRGRRLAGDTAVLEYDVDVRMPGEAQPQLEVTPITKYSSDPQLFVGRQIAVNKTY
ICYGLKQGNVRVLNSNNASRALFRGHGQRVTDMAFFAEDVHLLASVSIDGRVNVWEISED
LEEGDKPVEIKGNIVIAVQIVGEGEVVHPRVCWHCHKQEVLVVGIGKSILRIDTTKFGKA
KVYSAEAPLQCPVEKPIDGIQIVGKHDGEVTDLSMCQWMITRLVSASMDGTIKIWEDRKA
QPLAVLRPYNGKPVYSASFLTASDRPDHIILITGGPLNRELKIWSSTSEEGWLLPSDSDS
WKCTQTLKLKSSAATQVEDAFFNQVASMSHVGLLLLANAKKKAIYVIHFEYGPNPAATRM
DYIAEFTVTMPVLSFTGICDMLPHGICVPQIYCFQTQAIQQYTFDLYQCLPLPLENVGLE
MSHSNVSQDASNNEELTALDPYESKTSELIASAPKPTTQVGTSESGISVRYPPTSDSVEA
TALPEITTANVESKSVSLAPAIGDTDIGRVSSPSLPHSPRLSRKLSGFRMPLKSLEAGVP
PGDLGPKQPIVTYSGDLQKDNMPPKLFDMPSFNNDSEKDESKGAQADNTNLLTFKHRTHL
ITPSDILMAASSSDVTGLIVGKSEVDANSRDVVVNSDGANAEVEMVEFKVVGETSTHNDE
FGPHGEPRSCVSENKEKFFCSQASDLGIEVARQSSAISEDNLTEEEPQPVDNVGSESLAQ
PPRADDEIHDSKKDMSGKFSESVVSTAVMESPSPSSKGKKQKWRNSLASGSLSPSSGVFN
SADSSNGPAGSSNPVSVEATPPQVLALQERLSQLMHMQKETQKQMSNMVAIPVSKECRKL
EAALGRNIEKAVKSNNDALWARIQEENAKNEKLLRERTQQMTNLINKDLMAMLEKVVKKE
VPAIGQIVIRTVTPIIEKTISSAIADSFQRGVGDKAVNQLEKSVNVKLEVTVARQIQAQF
QTSGKQALQDALKAGIEASIIPAFETSCKAIFGQIDTAFQKGMVEHTNAAQQQFDAAHSQ
LAILLRDTINSASSVTQALRTELADGQRKLFTMAAAGANSKALNPLVNQLSNGSLGGGYE
KELSRLISEQKYDEAFTIPLLRNDLSIVSWLCYQVDLEAILSKEPLPLSQGVLLSLLQHL
AFDIGTDIPQKLRWMTSVALGINTADQTIVANEVQFYNIVDQVYKILHNLLSSPNVKDQN
GIQDLIFIVHSLMMKRR
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggcagcctcgtcaaacccaaatcaggttcccacaacccctattcctcaatatgacggt
cacggtttctacaaaccatcacctcctcaaccaaacacaacgtaccctcctccccagcaa
caacccttccactttcccaattaccctcaaaatcatcccctccaaaaccatcacaacaat
ctcccgcagcggtctctctcctatccgacgccgccttttcagcctttcccaaactccggt
ggtgcccaaatcatggccctccttcgtactccttcctccagttcgaaccctgagtcgact
gtgccattcacggccccggtgacggagtactcgacgggattagtggggccgccccgcatg
cccagcaacaaagtgccgagggggaggaggctggctggagatacggcggtgttggagtac
gacgtcgacgtgaggatgcctggagaagcgcaaccgcagctggaggtgacgccgattacc
aagtacagttctgatcctcagctttttgtggggaggcagattgcagtgaacaagacgtac
atatgttatgggttgaagcagggtaatgtgagggttcttaatagcaataacgcgtcgagg
gctctgtttcgtggccacggtcagagggtcacagacatggctttctttgcggaggatgtt
caccttttagctagtgtgagcatagatggacgggttaatgtatgggagatctctgaagat
cttgaggaaggagataagccagtggaaattaaaggaaatatcgtgattgctgttcaaatt
gtaggagagggggaggttgtacacccaagagtttgctggcattgtcacaaacaagaggtt
ttggtagttgggataggtaaaagtatcttgagaattgatactacaaaatttggaaaggcc
aaagtctactcagcggaggctcctctgcagtgtcctgttgaaaagccaattgatggaatt
cagattgttggtaaacatgacggggaagtaactgatttgtctatgtgccaatggatgatc
acccgtttagtttctgcctcaatggatggcacgataaaaatttgggaagatcgcaaggca
caaccacttgctgtattgcgaccatacaacggcaaacctgtttactcagcttcattccta
actgcttcagatcgaccagatcacattatactcatcactggtggacccctgaacagggag
ttgaagatttggtcctcgactagtgaagaaggctggttgctgcctagcgattctgattcc
tggaagtgcacacagactttgaaattgaagagctcagcagccactcaagttgaggatgca
ttcttcaatcaagttgcatcaatgtctcatgtaggcctcctcttacttgcaaatgctaag
aagaaagccatatatgttatacattttgaatatgggcccaatccagcagcaacccgaatg
gattacatagcagagtttacagtcaccatgccagtgttgagttttactgggatatgtgac
atgttacctcatggcatatgcgttcctcaaatctattgtttccagacgcaagctattcaa
cagtatacttttgacttataccagtgcttgccactgcctttggagaatgttggtttggag
atgtcacattccaatgtttcacaggatgcatctaataatgaagaacttactgctttggac
ccatatgaaagcaaaacttctgagttaattgcttcagcacccaaaccaaccacacaagtt
ggtacctctgaaagtggaatttctgttaggtatcctccaacctcagattctgttgaggca
actgctttgccagaaatcacaaccgcaaatgtagaatctaaatctgtttctttggcacca
gcaattggtgatactgatattggtcgtgttagctctccgtctcttccacacagtcctcga
ttgtctaggaaactttctggttttagaatgccactaaagagcttagaggctggtgttccg
cctggtgatcttggtccaaaacaaccaattgtgacttattcaggtgacctgcaaaaggat
aacatgcctccaaagttgtttgacatgccttcctttaataatgactcagagaaagatgag
agtaaaggagctcaagctgataatactaatttgctgacatttaaacaccgtacccatttg
ataacaccttctgatatattaatggctgcctcttcttctgatgttactggtcttattgtg
ggaaaaagtgaggtagatgcaaatagtcgggatgtggttgtcaatagtgatggagccaat
gcggaggtggagatggtcgagtttaaagtagtgggtgaaacatctactcacaacgacgaa
tttggtccccatggagaacctcgtagctgtgtttcagaaaacaaggaaaagttcttttgc
tcccaggcttcagatctgggaattgaagtggcaaggcagtcgtctgcaatatcagaagat
aatttgactgaagaggagcctcagccagttgataatgttggatcagaaagtcttgcccaa
cctcccagagctgatgatgaaatccatgactccaagaaagacatgtctggtaaattttct
gagtcagttgtatccactgcagtaatggaatcaccatctccaagttcgaaagggaaaaag
cagaagtggaggaattcactggcatcaggttcactttctccatcttcaggtgttttcaat
tctgcagattcttccaatggaccagctgggagttctaatcccgtttcagtagaagctact
cctcctcaagttttggccttgcaagagaggcttagccagctcatgcacatgcagaaggag
acccagaagcagatgtcaaatatggttgccatccccgtttccaaagaatgtagaaaactg
gaggcagctcttggacggaatattgagaaggctgttaagtcaaataacgatgctctgtgg
gctcgcatacaagaagaaaatgccaaaaatgagaagttattgagagaacgtactcagcaa
atgacgaacttgatcaacaaggacttgatggccatgttagagaaggtggtgaagaaggaa
gtgccggcaattggacaaattgtaatccgcacagtcactccaatcattgagaagacaata
tcttcagctattgccgattctttccagagaggagttggtgataaggcagtgaatcagctg
gagaaatctgttaatgtaaaacttgaagttactgtcgcaaggcaaattcaggcacaattt
caaacttctggcaagcaagccctccaagatgctttgaaagctggtattgaagcttcaata
attcctgcctttgagacctcatgcaaagcaatatttggccaaatagatactgcctttcag
aaaggaatggttgaacatacaaatgcagctcagcagcaatttgacgctgctcattctcag
ttggcgattttattgagggataccatcaattcagcatcatctgttactcaagctctacgc
acagaattagctgacggtcaacgaaagctgttcactatggcagctgctggagcaaactca
aaggcgctaaaccccttggtcaaccaattgagtaatggatctttgggtggtggatatgag
aaggaactatcaagactgatatctgaacagaaatacgatgaggctttcacgatacctctg
ctaagaaatgatttgtcaattgtatcctggttgtgttatcaggttgatttggaagccatt
ttgtcaaaagaacctcttcctttgagccaaggagtactgctctctcttttgcagcatctt
gcttttgacatcgggacagatataccccagaaactgcggtggatgacatctgtggcactt
ggtataaacacagcagaccaaacaatcgtggcgaacgaggtgcaattttacaacatcgtt
gatcaagtatacaagatactgcacaatctactcagttcaccaaatgttaaagatcagaat
ggcatccaagatctcatatttatcgtccattccctgatgatgaaaagaaggtaa
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