Tripterygium wilfordii (thunder duke vine): 119985651
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Entry
119985651 CDS
T07256
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119985651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119985651
Enzymes [BR:
twl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119985651
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119985651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
119985651
NCBI-ProteinID:
XP_038685874
LinkDB
All DBs
Position
19:424730..428989
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AA seq
725 aa
AA seq
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MPKTAKQWPFRAISLSRALSRSCSTTTATSAVPPPPPSFPLKHVTRSNFESALADLRSVV
RAADFVAIDLEMTGVTSSPWRESFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSQSL
SFIAHPHNFFVFPRQELLVDGSSYEFLCQTTSIDFLAKYQFDFNACINGGISYLSRVQED
EAVTRLNLLYEDCQLGSRHSLKEVRDTPLVSMTDVFFSERMKIRLGEWHDALLRDRNLGS
PIKRTLNDSNQPFQTIFFKMRPALALNGFTSHQLKLIQSVSKKHFKDLAYICMNGEGSSS
QHLVVYTDSEHDKDLLMKEVKDEHRKGEEMKIKNTIGFRHVIDLLSSEQKLIVGHNCFLD
VAHIYSKFFGPLPSTAEKFVTSVNKYFPQIIDTKVLLNANDILQLRMKRSSTSLSSAFSS
LCPQIALGSQRSDLFFQSRVKVEVQVDDTRSSIWSSGAKHEAGYDAFMTGCIFAQACSHL
GIDFKVFSPTEHLANSEKLQKHMNLLYLSWTNGDTIDLSTGHRTAGILSSSNLKKRYPKI
LFENIVLVWGFPSKLKAMEIKECVCKVFGPTSVTSIYHLDETAVFVQFGSAELVSEFLVL
KETLERNDNAISVLHPLSKLLEGGNTHAADYGTYKEICSSPISKVLFADQAEAVGIKWKT
KLVESEVEVRTQDHECSHKQSTVNSDSDSIQKNRRKIDYAIRSSGHDINDSIYDTEIKQI
SAANL
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaacagccaagcaatggcctttcagagctatttcgctctctcgtgcactctca
cgttcatgttccaccaccaccgctacctctgctgtaccaccgccgccaccgtccttccct
ctcaagcacgtgaccaggtcgaatttcgagtccgcgcttgccgacctcaggagcgtcgtg
cgggcggcggacttcgtcgccatcgaccttgagatgaccggagttaccagttccccatgg
cgtgagtcattcgagttcgaccgcttcgacgttaggtacctcaaggtcaaggattccgct
gagaagttcgccgtcgtacaatttggtgtttgtccattccgatgggactcccagagccta
tccttcatcgctcatccgcacaatttctttgtatttcctcgtcaagagcttctggttgac
ggctcatcttatgagtttctctgccagacaacctcgattgatttcttggctaaatatcag
tttgactttaatgcttgcataaatggaggaatatcttatttatccagagtgcaagaagat
gaggctgtaacaagattgaacctgctatatgaggattgccaattaggttctcggcatagc
ttgaaggaagttagagacactccattggttagcatgacagatgttttcttcagtgaaaga
atgaagatcaggctgggtgaatggcatgatgcgttattaagggacagaaatttgggttcc
ccaattaaaaggaccttgaatgactcaaatcagccgtttcaaacaattttcttcaaaatg
cgtcctgcccttgctctgaatggtttcacctcccatcaattaaagttaattcaatcggtc
tcaaagaagcatttcaaagatcttgcttatatttgcatgaatggtgaaggctcatcttca
caacatttagttgtgtataccgattcagagcacgataaggacttgcttatgaaagaggtg
aaggacgaacatcgcaagggggaagagatgaagataaaaaatacaattggttttcgccac
gttattgatctactttcctcagaacagaagttgattgttggtcacaattgcttcctcgat
gttgcacacatatatagcaagtttttcggtcctcttccttcaactgctgagaaatttgtc
acctctgttaacaagtactttccacaaatcattgatactaaagtgctcttgaatgccaat
gatatacttcaactacggatgaagagatccagtacatcgttatcctccgccttttcttct
ttgtgtccacaaattgctttgggttctcaaaggtctgatttgtttttccaatcccgtgta
aaggtggaggttcaagtggatgatacaaggtcatccatatggagctctggagccaaacat
gaagctgggtatgatgctttcatgacaggctgcatttttgcccaggcctgtagtcatctt
ggcattgattttaaagtcttttctcccactgaacatctggccaatagtgaaaagctccag
aagcacatgaaccttctttatctcagttggaccaatggagacactattgatttaagtacc
ggtcatcggactgcagggattttgtcatctagtaacctcaaaaagaggtatcctaagatt
ttgtttgagaacattgtattagtctggggttttccctccaaactcaaggccatggagata
aaagaatgtgtttgtaaagtctttggcccaacatctgttacctccatctaccatttggat
gaaactgcggttttcgttcagttcggcagtgcagaactggtctctgagtttctagttctg
aaggaaaccttggagaggaatgacaacgcgatctctgttttgcatcctttatctaaactg
ttggagggtggaaatacgcatgccgctgattacggaacatacaaagagatatgcagttca
cccatttcaaaggtcttgtttgcagatcaggcagaagcagttggtatcaaatggaagact
aagttggtagaatctgaggttgaggtgagaacccaagaccatgaatgttcacacaaacaa
agtacagtaaacagtgattcagactctatacagaagaacaggaggaagatagactatgca
attcgatcatcaggtcatgatattaatgattctatctatgacactgaaataaagcagatt
agtgctgctaatttatga
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