Tripterygium wilfordii (thunder duke vine): 119986246
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Entry
119986246 CDS
T07256
Name
(RefSeq) uncharacterized PE-PGRS family protein PE_PGRS46-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
twl03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119986246
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
119986246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119986246
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
119986246
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
119986246
NCBI-ProteinID:
XP_038686748
LinkDB
All DBs
Position
19:485132..489206
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AA seq
709 aa
AA seq
DB search
MDETEGGDFHRNEAISAVADDGFLGEEDDDYEDLYNDVNVGEGFLQSLSRKNQAPDVAYQ
DDAAAASTNNGNNNGGSRNDVEESKDAYPQVEPIPGTSQVSLSGVAGESSVSRVAGYESQ
GYKGPSYLGPAGSGGIRVELGQGSSKVSEVENQSANINNIIINTISVNNSSVAMHQQQEP
QQVPPHPAPVGNIGTLVNDNVNRNMNVAVGGAGNSAHNVGGVGGGGGGGTILFVGDLHWW
TTDAELEAELVKYGSVKEVKFFDEKASGKSKGYCQVEFYDPAAATACKEGMNGQLFNGRP
CVVAFASPYTVKRMGEAQVNRNQQGVAPARRGPNDAGGKGGPGAGPSAGGNNMAGGGPGG
NYQGGDGNRGYGRGNWGRGNAQGMGSRGPGPMRNRPGGMGGRGLMGNGGNGFGQGIGAAS
PMLHPQSMMGQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGVLSSFPPVGGMGFPGVAPHV
NPAFFGRGMPMNGMGMMPSGGVDGPNMGMWADPSMGGWGGEEHGGGRAGESSYGEEAVSD
HQYGEVSHDRGGWQNPGKDKDRASERDWSGSSDRRYRDDRDTGYERDLPREKDTGGQDHE
WSERRHRDDRDVVKERDRDRERDREHSRDRDRERDRDRDRERERDRYKDDRDRYVDHHRY
RDREVEHDDEWDRGRSSRTHSKSRLSHDEEHRSRSRDADYGKRRRLTSD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggatgagacggagggaggcgattttcatcgaaacgaggcgatctcggcggtggccgac
gacgggttccttggagaggaggacgacgactatgaggacctctacaacgacgtgaatgtt
ggcgagggcttcttgcaatccttatctcgcaagaaccaggcccctgacgtggcctaccaa
gatgatgccgctgctgccagtaccaataacgggaacaacaatggcggcagcagaaacgac
gtggaagagagcaaggatgcttatccccaggttgaaccgattccaggtacttctcaagta
tctttatcaggtgttgctggtgaaagtagtgtttctagggttgctggttatgaaagtcag
gggtataaggggccatcttatttgggcccagctggatcgggagggattagggttgaattg
gggcaaggttctagtaaagtaagcgaggttgagaatcaaagtgctaatattaataatatt
attattaacaccattagcgttaacaacagtagtgtggctatgcatcaacagcaagagcca
caacaggtgccaccgcatcctgctcctgtggggaatatagggactctagtcaatgataat
gtgaatagaaacatgaatgttgctgttggtggtgctggaaattctgctcataatgttggt
ggtgtgggtgggggtggaggtggtggcacaatcttatttgtcggggatttgcattggtgg
acgacagatgcggagcttgaggcagagttggtgaagtatgggtctgtgaaggaagtgaaa
ttttttgatgagaaggcaagtgggaaatcaaaaggttattgccaggtggagttttatgat
ccggctgcagccacggcttgcaaggagggtatgaatgggcaactttttaatgggcggccc
tgtgtggtggcttttgcttcaccttatactgttaagaggatgggagaggcccaggtcaac
aggaatcagcagggggttgcgcctgctagaagggggcctaatgatgctgggggaaagggt
ggtccaggtgctggtcctagtgctggtgggaataatatggcaggtggtgggcctggtggc
aattatcaaggtggtgatggtaatagagggtatggtagaggaaattgggggaggggtaat
gcacagggaatgggaagtaggggacctggtccaatgaggaataggcctggtgggatgggt
ggtagaggtttaatgggcaacggtggaaatgggtttggccaaggcattggtgcagcttct
ccaatgttgcaccctcagtcaatgatgggacagggttttgatcctgcatttggtgggcca
atggggagaatgggaagttatggaggctttcctggagctcctacacctccattttctggt
gttttatcttcatttccgcctgtgggaggtatgggttttcctggtgtggctcctcatgtg
aatccagccttttttggcagagggatgcctatgaatggaatggggatgatgccgtctggt
ggtgttgatgggcctaatatgggaatgtgggcagatcctagtatgggtggatggggtggt
gaagagcatggtggtggaagagcaggtgagtctagttatggagaggaagctgtgtccgac
catcaatacggtgaggtgagtcatgacagaggaggctggcaaaatcctgggaaggacaaa
gatagggcttcggagagggactggtctggttcttccgatagaaggtatcgtgatgataga
gatactggatatgaaagagatttgcctagagaaaaggatacgggtggtcaagaccacgaa
tggtcagaaagaaggcatcgtgatgacagagatgttgttaaagaacgagacagagatcgt
gaaagggatcgagaacattctcgtgatcgtgatcgagagcgtgacagggatcgtgatcgt
gaaagggaacgtgatcgatacaaggatgacagagatagatatgtcgatcatcatagatac
agagaccgggaagtggagcatgatgatgaatgggacaggggaaggtcatcgagaactcac
agcaagtcacggttgtcgcatgatgaggaacataggtcaagatctagggatgctgattat
gggaagaggcgaaggcttacctcagactga
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