Tripterygium wilfordii (thunder duke vine): 119986497
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Entry
119986497 CDS
T07256
Name
(RefSeq) sm-like protein LSM8 isoform X1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119986497
09123 Folding, sorting and degradation
03018 RNA degradation
119986497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119986497
03041 Spliceosome [BR:
twl03041
]
119986497
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119986497
mRNA degradation factors
5'-3' decay
Lsm complex
119986497
Spliceosome [BR:
twl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119986497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Cybc1_Eros
TNP-like_RNaseH_N
DUF150_C
Motif
Other DBs
NCBI-GeneID:
119986497
NCBI-ProteinID:
XP_038686995
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Position
20:complement(11116929..11122967)
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AA seq
149 aa
AA seq
DB search
MVLGIYVWLNSVLRSFDYLVMGRVFFFFFWLHIMIQNLNSWSLLLANFRSSKMSGPGLES
LVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQLLVLGLYIIRGDNI
SIVGELDEELDSHLDLSSLRAHPLKPVIH
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atggttttgggaatttacgtttggcttaattcagttctgaggagcttcgattaccttgtt
atgggcagagtgttttttttttttttttggttgcatatcatgatccaaaacctgaactca
tggagcctcctacttgctaatttcaggagtagcaaaatgtcaggcccaggacttgagagt
cttgtggatcagacaatttcagttatcacaaatgatggtcgtaatatagtgggaatctta
aaaggctttgatcaggccacaaatatcattcttgatgaatctcatgaacgtgtttactcc
actaaggaaggagtgcagctgctcgtgttgggtttgtatataataaggggtgacaacata
agtattgttggggaacttgatgaagaacttgattctcatctcgacttgtcaagtttgaga
gcacatcccctcaagcctgtcattcattga
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