Tripterygium wilfordii (thunder duke vine): 119987119
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Entry
119987119 CDS
T07256
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119987119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119987119
03012 Translation factors [BR:
twl03012
]
119987119
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119987119
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119987119
Translation factors [BR:
twl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119987119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
NACHT
AAA_19
NPHP3_N
ATPase
Dicer_dimer
T2SSE
ABC_tran
AAA_23
AAA_16
AAA_30
ATPase_2
Motif
Other DBs
NCBI-GeneID:
119987119
NCBI-ProteinID:
XP_038687799
LinkDB
All DBs
Position
20:10552594..10564351
Genome browser
AA seq
1207 aa
AA seq
DB search
MNYSAVLQGCIRTTTTMSVRPTSLNFHKTPKTLKPSLFSAVLVKAQTLPQRTEYYVPRYL
SPKVVRCSASVIKCLRAPASSRSPGLGLRSVALPYLRQQSSSYGRYAYQDESSDDSDYES
GSPQQQTGASTLDNIDEWRWKLTMLLCNKDNQEVVSREKKDRRDFEQLSALASRMGLHCR
QYAKVVVFSKDPLPNYRSDLDDRRPQREVILPFGIQMEVDAHLQAYLSRKSMDGARFSDN
TLSRSNTEGGITIDEKQEPVMQNSVIMERILRRKSLQLRNKQQDWQESPDGQKMLEFRRS
LPTYKERDSLLKVISENQVVVISGETGCGKTTQLPQFILECEIEAARGAACSIICTQPRR
ISAMAVSERVAAERGEQLGESVGYKVRLEGMKSRDTRLLFCTTGILLRRLLVDRNLKGVT
HVIIDEIHERGMNEDFLLIVLKDLLPRRPELKLILMSATLNAELFSSYFGGAPTIHIPGF
TYPVREHFLENILETTGYRLNSYNQIDDYGQEKVWKMQKQAQTFRKRKSQIASAVEDALE
YADFKGYSPRTRESLSCWNPDSIGFNLIEHVLCHIIKNERAGAVLVFMTGWDDINALKEQ
LQAHPLLGEPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFV
VDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVHDAFADY
QMPELLRTPLQSLCLQIKSLQLGSISDFLSKALQPPEPLSVQNAVEYLKIIGALDENENL
TVLGRNLSILPVEPKLGKMLILGALFNCLHPVMTVVAGLSVRDPFLMPFDKKDLAESAKA
QFSSRDYSDHLALVRAYEGWKDAERQQSGHEYCWRNFLSAQTLRAIDSLKKQFFFLLKDA
GLVDNMENCNRWSHDEHLVRAVICSGLFPGICSVVNKEKSIALKTMEDGQVLLHSNSVNA
AEPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNLSEGSLDGHLKMLGGYLEFF
MKPALAETYLNLKRELDELIQKKLLNPTSGMQFHDELLSAVRLLVSEDQCEGRFVFGRQA
IAPSKKASEGTSPSSPLRGETGVEGANFKNKLQTLLARGGHGAPTYKTKQLKNNKFRATV
IFNGLNFEGQPCNSKKLAEKDAAGQALLWLKGETQSSPRDLDHVSMLLKKSKSKSQKNTS
LSGAKWS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgaactattctgctgttttacaaggttgtatcagaactaccaccaccatgtctgtaaga
cccacctctctcaatttccacaaaacccctaaaaccctaaagccttcacttttctcggct
gttttggtgaaagcccagaccttgcctcagaggactgagtattatgttccccgttacttg
agccccaaggtggtacggtgctctgcttctgtgattaagtgtttgagagctcctgcttct
tccaggagtcctgggttgggtttgaggagcgtggccttgccgtatctgcggcagcagagc
tcaagttatggacggtatgcgtaccaggatgagtcgagcgatgattccgattacgaatca
gggtcgccacagcagcaaacgggtgcttcaacacttgataacattgatgagtggagatgg
aagctgaccatgctgctgtgcaataaagacaatcaagaagttgtgtcgagagagaaaaaa
gacagacgtgattttgagcaactttcggctctagcaagcagaatgggtttacattgccgt
caatacgcgaaagtagttgtcttcagtaaagaccctctgccaaattacagatctgatctt
gacgataggcgtccacaaagagaagtgatcttaccttttggaattcaaatggaagtagat
gctcatcttcaagcttacctatcccggaagtcaatggatggggcaaggttttcagataat
accttgtcaagatcaaacactgagggaggtataaccatagatgaaaagcaggagcccgtg
atgcagaatagtgttatcatggagagaatccttcgacgtaaaagtttgcaattacgtaat
aagcaacaagattggcaggagtctcctgatgggcaaaagatgcttgaattccgtagaagt
ctgcctacatacaaagagcgggattctttattaaaagttatttcagaaaatcaggtggta
gtcatttcaggggaaactggttgtgggaagaccacacaacttcctcagtttatactagaa
tgcgaaattgaagctgctcgtggagctgcctgtagtatcatatgcactcaacctagaaga
atatctgccatggctgtttctgaaagagttgctgcagagcgaggagagcagcttggggaa
tctgttggttataaagttcggctagaaggcatgaaaagtagggacactcgccttcttttt
tgcacgactggcatactattgaggagattattggttgatagaaatctgaaaggtgttact
catgttatcattgatgagattcatgaacgtggaatgaatgaagattttcttctcattgtc
ttgaaagatctccttcctcgtcgaccagaattaaagttgattctgatgagtgcaactctg
aatgcggagcttttctcttcttacttcggtggtgcaccaacgattcatattcctggtttt
acttatccggttcgagaacattttctggagaatattctggaaacgactggatatcggttg
aattcatataatcaaatcgatgactatggtcaagaaaaggtgtggaaaatgcagaaacaa
gctcaaactttcagaaagagaaagagtcaaattgcttctgctgttgaggatgcactcgaa
tatgctgattttaaggggtatagtccacggactcgtgagtccttgtcgtgctggaatcct
gactcaattggctttaacctaatagagcatgtgctttgccacataatcaagaatgaaagg
gctggggctgttttggttttcatgactggttgggatgacataaatgctttaaaggagcaa
ctccaagcccatcccctgctgggtgaacctagtagagttttattgcttgcatgccatggt
tccatggcaagctcagagcagaggctaatctttgataagcctgaggatggggtgaggaag
atagttctagctactaacatggccgagactagcatcaccatcaatgatgtggtttttgtg
gttgattgtggaaaagcaaaagagacatcatatgatgcactaaataacactccttgtttg
cttccatcatggatctctaaggcagctgcccggcaaagaagaggaagagcagggcgtgtt
caacctggcgaatgttaccatctctatcctagatgtgtacatgatgcatttgctgattac
caaatgcctgaacttttaaggacaccattacagtctttatgcttgcaaatcaaaagtttg
caacttggaagcatttcagatttcctgtctaaggccttgcagccccctgagcctctctcg
gttcaaaatgctgttgaatacttgaagattattggggcattagacgaaaatgaaaatttg
acagtcttaggacgcaacttatcgattctcccagttgaaccaaaacttgggaaaatgctg
atattaggagctcttttcaattgtcttcatccagtaatgaccgtggttgctggtcttagt
gtcagagatccattcctaatgccctttgacaagaaagatcttgctgaatctgcaaaagcc
caattctccagtcgcgactatagtgaccatcttgctcttgtccgggcttacgagggttgg
aaagatgctgaaaggcagcaatctggtcatgagtattgttggaggaattttctttctgca
caaactctgagagcaattgactctctaaaaaagcagttcttctttttactgaaggatgct
ggtttggttgataacatggaaaactgcaataggtggagccatgatgagcatcttgttcga
gcagtcatctgttcaggcctgttccctgggatatgttctgttgtgaacaaagagaagtca
atagcactgaaaacaatggaggatggtcaggttcttctccactcgaattctgtgaatgct
gctgaacccaagattccatacccatggctagttttcaatgaaaaggtgaaagtgaattca
gtattcctcagagattcaactggtatatctgattctgtgctgctactatttggagggaac
ctttctgagggtagcctagatgggcacctaaaaatgttgggaggatacttggaattcttc
atgaaacccgcattagcagaaacttacttgaacctaaagagagaacttgacgaattaatt
cagaagaaacttctgaatcccacctcgggtatgcaattccatgatgagctcctatccgca
gtaagattgctggtctctgaggatcaatgtgaaggtagatttgtttttggtcgtcaggct
atagcaccctcaaagaaggcatcggaagggacatcacctagctcacctttacgaggtgag
actggagttgagggtgctaatttcaagaataagctacaaacattgcttgctaggggagga
catggagctcccacctataagacaaaacaacttaaaaacaataagttccgcgccaccgtg
attttcaatggcttgaactttgaggggcaaccttgcaacagtaagaaattagcagagaag
gatgcagccggtcaggctctgctgtggttgaagggcgagacacagtcatctcccagagat
cttgatcatgtttcaatgcttttaaagaagagcaaaagcaaaagtcaaaagaacacttca
cttagtggtgcaaagtggagttaa
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