Tripterygium wilfordii (thunder duke vine): 119987396
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Entry
119987396 CDS
T07256
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03030
DNA replication
twl03420
Nucleotide excision repair
twl03430
Mismatch repair
twl03440
Homologous recombination
twl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119987396
03420 Nucleotide excision repair
119987396
03430 Mismatch repair
119987396
03440 Homologous recombination
119987396
03460 Fanconi anemia pathway
119987396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
twl03000
]
119987396
03032 DNA replication proteins [BR:
twl03032
]
119987396
03400 DNA repair and recombination proteins [BR:
twl03400
]
119987396
Transcription factors [BR:
twl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
119987396
DNA replication proteins [BR:
twl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
119987396
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
119987396
MMR (mismatch excision repair)
119987396
DSBR (double strand breaks repair)
HR (homologous recombination)
119987396
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
CDC24_OB3
Rv0428c_N
Motif
Other DBs
NCBI-GeneID:
119987396
NCBI-ProteinID:
XP_038688223
LinkDB
All DBs
Position
20:9437042..9440627
Genome browser
AA seq
622 aa
AA seq
DB search
MEKSVNPDAIATILANPSPDSSTDIVVQVVDLKLAGSRYMFNANDGKMKLKAIFQSSMST
EVISGKIQNLGLIRILDYALNDIASKGEKYLIVTKCEVVSPALDLEIKTQVKSEESGLLL
KPKAEDEIKSEVNNEGTSILLKPKKEMVTKSAAQIVHEQHQNMAPVARMAMTRRVHPLIS
LNPYQGIWTIKVRLTSKGTLRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFFDK
FQLGKVYYISKGTLKLANKQFSSVKNDYEMTLNENSEMEEASDEATFIPETKFDFVQIDQ
LGPYVNAKELVDVIGIVQSVSPTMSIRRKSNNENVPKRDIVIADDTKKTVVVSLWNELAT
DVGQELLDNVDKSPIIAIKSLKVGDFQGVNLSTLPRSIMQVNPDTPEAKKLRSWYDSEGK
GASLASVGSGMSPLIKSGLRSMYSDRVSLANILSNPSLGEDKAAFFSVRGYISFIKPDQA
MWYRACKTCNKKVTDALGSGYWCEGCQKNDDECSLRYIMMSKISDASAEAWVSAFNEEAE
RMIGCSADELEKLKSQEGEENPYQLKLKEATWTPLLFRVSVAQHEYNNEKRQRITIKSVA
PLDLAAESRYLLEEISKMKLSQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggagaaatcagtgaacccagatgcgatagcaacaatactggcaaacccatctccagat
tcgtccactgatattgttgtgcaagtggtggatctcaagctcgctggtagtcgatacatg
tttaatgccaatgatgggaagatgaaactcaaagcgattttccaatcaagcatgtccacc
gaggtcatctctggaaaaatccaaaatcttggtctcatcaggattcttgactatgctctc
aatgatattgctagtaaaggagagaaatatctgattgtaacaaaatgtgaggtggtttct
cctgcacttgatttggaaatcaagactcaggtgaaaagtgaggaatctggcttactgttg
aagccaaaggccgaggatgaaatcaagagtgaggtaaacaatgaaggaacatccattctt
ctgaagccgaagaaagaaatggttaccaaatcagctgcccaaatagtgcatgaacagcat
caaaatatggcaccggtggctcgaatggccatgacacgtagagttcatcctcttatttcc
ttgaacccctatcaaggcatttggaccataaaagttaggttaacaagcaaaggaacattg
cgtacatataagaatgcaagaggggagggatgtgtcttcaacgtggagttaacagatgaa
gatggtacacaaatacaagcaacaatgtttaatgaggccgctaggaagttctttgacaag
ttccaattgggaaaggtttattacatatcaaagggaactctaaaacttgccaacaagcaa
tttagttcggtgaaaaatgattacgagatgaccttaaacgagaattctgagatggaggaa
gctagtgatgaagcaactttcattcctgaaacaaaattcgattttgtccagattgatcag
ctgggtccctatgttaatgcaaaggagcttgttgatgttattggaattgtccaaagtgtc
tctcctacaatgagtatccgaaggaagagcaataatgagaatgttccaaagcgtgatata
gttattgcagatgatacgaaaaagactgttgtggtttctttgtggaatgagcttgccact
gacgtgggacaggaattgcttgataatgtcgataaatctcccataattgcaattaagtct
cttaaagttggagattttcaaggtgtgaatctatcaacactgcccagaagcatcatgcag
gtcaatccggacactcctgaagcaaagaaactgcgatcttggtatgattctgagggtaaa
ggtgcttcattggcttctgtcggctctggcatgagtcctttaatcaagagtggattacgg
tctatgtactctgaccgggtttcccttgccaatatattaagtaacccctccttgggagag
gacaaggctgcatttttcagtgttagaggatatataagcttcatcaaaccggatcaggca
atgtggtatcgggcttgcaaaacatgcaacaagaaagtgacagatgctcttggttccggt
tattggtgtgaagggtgccaaaagaatgacgatgagtgtagcttaaggtacattatgatg
tcaaaaatctcggatgcaagtgctgaggcctgggtttctgcattcaacgaagaagcagag
agaatgattggttgctccgcagatgagcttgagaagctaaagtcacaggagggagaagag
aatccataccaactgaagttaaaggaagctacttggactccacttcttttcagggttagt
gttgcacagcatgagtacaataatgagaagaggcagaggataacaatcaaatctgttgca
ccacttgacttagctgctgaatccagatatttgctagaggagatatctaaaatgaaactt
agccaatag
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