Tripterygium wilfordii (thunder duke vine): 119987513
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Entry
119987513 CDS
T07256
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119987513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twl03400
]
119987513
Enzymes [BR:
twl01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
119987513
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
119987513
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
119987513
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
119987513
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
119987513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
Zeta_toxin
AAA_16
nSTAND3
AAA_29
AAA_17
CPT
6PF2K
AAA_22
AAA
NACHT
Viral_helicase1
AAA_25
AAA_5
Motif
Other DBs
NCBI-GeneID:
119987513
NCBI-ProteinID:
XP_038688371
LinkDB
All DBs
Position
3:12825973..12830011
Genome browser
AA seq
764 aa
AA seq
DB search
MDVDIKGTSNAEGEEEKGKPIVVILVGAPGSGKSTFCDHVMRSSTRPWVRVCQDTINNGK
SGTKAQCLKSAAIALKDGKSVFIDRCNLDREQRVDFVKLGGPQVDIHAVVIDLPAQLCIS
RSVKRTGHEGNLQGGRAAAVVNKMLQKKELPKLNEGFSRITFCHNETDVQAALNTYTLLA
PLDILPNGCFGQKNPDSKVQLGIMKFLKKMEAPSNTESNLNSIRDNESQISEEKNPSSCT
GKEMISSLSCAADKEVKEGNDQLALGSVGPGVSADDGPTLAFPSISTADFQFNHEKASDI
IVEKVEEFVKKVGNGRLVLVDLNHGSKILSLVRAKVAQRNIDSKKFFTFVGDITQLYSKG
GLRCNVIANAANWRLKAGGGGVNAAIFSAAGPSLEIATKEQASSLHPGNAVVVPVPSSSS
LYGREGVSHVIHVLGPNMNPQRPNFLNDDYNRGCKILRDAYTSLFEGFVSIIRTQSNFPT
RSSENLKHEPLKSGDTSHDAPTVFFSSNTDQKIKRNNNYESERSKKCKGFQDEARAATTD
SRARHINKHENDVSRTMAWGSWAQSLHHIAMHPARHKNDVLEISDDIVVLNDLYPKAQKH
LLVVARCDGLDSLADVGKDHLQLLMSMHAKGLEWAEKFLHEDPSLIFRLGYHSAPSMRQL
HLHVISQDFNSNHLKNKKHWNSFTTAFFRDSVDVIEDIRTAGKATLKEDDSLLAMELRCH
RCRSAHPNIPRLKSHISNCRAPFPVTLLESSRLVLAPTKIASHS
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgatatcaaaggtacttcgaatgccgaaggtgaggaagagaaggggaagcca
attgtggtgatattggtgggcgcacctggtagtggcaagtccaccttctgcgatcatgtc
atgcgctcttccactcgaccctgggttcgcgtctgccaggacactattaataatggtaaa
tcaggaacaaaggctcagtgtttgaagagtgcggccattgctctgaaggatggcaagagt
gtatttattgataggtgcaacctggatagagagcagcgtgtggattttgttaagcttgga
ggtccccaagtagacatacatgccgtggtaattgatcttccggctcagctatgtatatct
cggtctgttaagcggactgggcatgaaggcaatctgcaaggtggaagagctgcagcagtt
gttaataaaatgctacaaaagaaagaattgcctaagttgaatgaagggttttctcgaatt
acgttctgccataatgaaaccgacgttcaggccgctctcaatacttataccttgcttgct
ccattggatatccttccaaatgggtgctttggccagaagaaccctgattccaaagttcaa
cttggtataatgaagttcttaaagaaaatggaggctccttctaacactgaatctaatttg
aatagcattcgggataatgagtctcagatttctgaggaaaagaatcctagtagttgcaca
ggtaaggagatgatctcttcattatcgtgtgctgcagataaggaggttaaggaaggtaac
gaccagctggccttagggtccgttggtcccggtgtttctgctgatgatggtcctacactg
gcatttccatctatttcgactgcagatttccagttcaaccatgaaaaggcatctgatatt
attgttgagaaagttgaggaatttgtgaagaaagttggtaatggcagacttgttctggtt
gacctgaatcatggatcaaaaattttgtctttggttagggctaaggttgctcaaagaaac
atcgactcaaaaaagtttttcacatttgtgggtgatattactcagctgtattcaaaagga
ggtttacgctgcaatgtgatagctaatgccgccaactggcgactaaaagctggaggtggg
ggtgtcaatgctgcaattttcagcgctgctggtccatccctagagattgctacgaaggaa
caggcaagctctctacaccctgggaatgctgttgttgttcctgtcccttcatcttcctct
ttgtatggtagggaaggggtatctcatgtcatacatgttcttggaccaaatatgaacccc
cagagacctaactttctcaatgatgactataatagaggctgcaaaattcttcgcgatgct
tatacatcgctgtttgaaggttttgtatctataataaggacccaatcaaactttccgacg
agaagcagtgaaaaccttaaacacgagcctttgaaatcaggggatacttctcatgatgca
cctacagtttttttctcatcgaataccgatcaaaagattaagagaaataataactatgag
tctgagagaagcaaaaaatgcaagggatttcaggatgaagctagagctgcaaccacagat
tctagggctagacatataaataagcatgagaatgacgtaagcaggacaatggcctggggt
tcttgggctcaatctcttcatcacattgccatgcatcctgcaaggcacaagaatgatgtg
ctggagatatctgatgatattgttgtcctcaatgatctctatcccaaggctcagaaacac
ctgttggtggtggcacgatgtgatggtcttgattcccttgcagatgtaggtaaagatcac
cttcaattgttaatgtcgatgcatgccaaggggttggaatgggctgaaaagtttttgcat
gaagatccatcgctaatcttccgccttggatatcactcggcaccatccatgcgacaatta
cacctgcacgttatcagccaggatttcaattcaaatcatcttaagaataagaagcactgg
aactcttttactactgccttttttcgtgattctgtggatgtgattgaggatatcaggact
gcaggaaaggcaacattaaaagaggatgatagcctgttggcaatggagttgcgttgccac
cgatgtagaagtgcacatcctaacatacccagattgaagtcccatattagcaattgtcga
gctccctttcctgtcactctacttgaaagtagccgtttagtgcttgcaccaaccaaaatt
gcatctcattcctag
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