Tripterygium wilfordii (thunder duke vine): 119987575
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Entry
119987575 CDS
T07256
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03022
Basal transcription factors
twl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119987575
09124 Replication and repair
03420 Nucleotide excision repair
119987575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
119987575
03400 DNA repair and recombination proteins [BR:
twl03400
]
119987575
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119987575
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119987575
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119987575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
119987575
NCBI-ProteinID:
XP_038688444
LinkDB
All DBs
Position
20:3969951..3979428
Genome browser
AA seq
772 aa
AA seq
DB search
MGHGERDRPNKKLKSSGKQNDFQSGAIVEAEDVYFGEEAEDGFRDDAIEGKKRDFSKLEL
KTDHANRPLWACADGRIFLETFSALYKQAYDFLIAIAEPICRLESMHEYNLTPHSLYAAV
SVGLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNHYFIESPFPEVLKK
LLCDEVISRAWIASEGSRGSDGFTISKAAGEIGTSDELLNEAELAAAAEEKETHSFEIDP
SQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLHMELKPEAQPRPYQEKSLSKMFGNGR
ARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHICRF
TSDSKERFHGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF
RKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANLLDLVKGGFIANVQCAEVW
CPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT
EYAMKLRKPMIYGATSHVERTKILQAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSH
AGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQ
GYSFKVITSLPPPDSGADLSYHRLDDQLALLSKVLSAGDEAVGLEQLEEDADDIALHKAR
LSLASMSAMSGANGMVYMEYSTGQKKLAGQGHLKSKPKDPSKRHYLFKKRYA
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgggacatggggagagggatcgaccaaacaagaaactgaaatcctcggggaagcagaat
gatttccagagtggagcgatcgtggaagctgaggatgtttattttggtgaagaagctgag
gatggtttccgtgacgatgcgatagaggggaagaagagggattttagcaaacttgaactg
aaaaccgatcatgccaatcgcccattgtgggcttgtgctgatgggcgcatattcttggag
actttctctgctttgtataaacaagcctatgattttctcatcgccatagctgagcccata
tgcaggctagaatcaatgcacgagtacaatttgacccctcactcgttgtatgcggcagtt
tcagtgggtcttgagacggaaaccatcatatcagttttaaataagttgtctaagaccaag
cttcctaaggagatgattgatttcattcatgcttcaaccgctaattacggcaaagtaaag
cttgtgctcaagaaaaatcactactttattgagtccccatttccagaggtattgaagaag
ttgttgtgtgatgaagttatatctcgagcatggattgcttctgagggttctcgtggaagt
gatggctttacaatcagcaaagctgcaggcgaaattggaactagtgatgagttgctaaat
gaagcagaattagcagctgcagctgaagaaaaggaaacccactcatttgaaatcgaccca
tctcaggttgagaatgtaaagcaaaggtgcttgcccaatgctttgaattatccaatgctg
gaggaatacgacttcagaaatgatacggtcaaccctgatcttcacatggagctgaagcct
gaagcccagccaagaccatatcaggaaaagagcctaagtaaaatgtttggaaatgggaga
gcaagatctggtattattgtattgccatgtggtgctgggaagtcgttagttggtgtttcc
gcagcgagcagaataaagaaaagttgcctttgtttagcaacaaatgctgtttcagttgat
cagtgggcatttcagtttaagctgtggtcaaccatcaaagatgaacatatttgtcgtttc
acatctgacagcaaggaaagattccatggcaatgctggtgtcgtcgtgacaacctataac
atggttgctttcggtggaaaacggtccgaagaatctgaaaagattattgaggaaataaga
aatagagaatggggactgcttctgatggatgaagtgcatgtggttcctgctcacatgttt
cgaaaagtcatcagcatcactaaatctcactgcaaacttgggctcactgcaacacttgtt
agagaggatgaaaggattacagatttgaacttccttattggtcccaaattgtatgaagca
aatttgttggatctagtcaaaggagggtttattgcaaatgtgcagtgtgctgaagtatgg
tgtcccatgacaaaagagttttttgctgaatatctgaagaaagaaaattccaagaagaag
caggcactttatgttatgaaccctaacaagttcagagcttgtgaatttctcatacgattc
catgagcagcagcgtggtgataagataatcgtgtttgcagacaatctttttgcacttaca
gagtatgcaatgaaacttcgaaagcctatgatctatggtgcaaccagccatgttgagagg
acaaaaattctccaggccttcaagactagtcgggatgttaacactgtcttcctatcaaag
gtgggtgataattcaatagatattccagaggcaaatgtgataattcagatttcatctcat
gctggttcaagacgtcaagaagctcaacgattgggtcgtattcttagggcaaagggtaaa
ctacaagataggatggcaggagggaaagaggagtataatgcatttttctattcccttgtt
tcaacagatacacaggagatgtactactcaacaaaaagacagcagtttctgattgatcaa
ggttacagttttaaggtgataacaagcttacctccacctgattcaggagctgacttgagt
taccatcgtcttgatgaccaattggcacttctcagcaaggttttgagtgctggtgatgaa
gcagttggtctggagcagttagaagaagatgcagatgatattgccctccacaaagcccgt
ctctccttggcatccatgagtgcaatgtccggcgcaaatgggatggtttacatggaatac
agcactggacagaagaagcttgctgggcagggccatttgaaaagtaagcctaaggatcca
tccaagcggcattatttgttcaaaaaacgttatgcctga
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