Tripterygium wilfordii (thunder duke vine): 119987674
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Entry
119987674 CDS
T07256
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119987674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
twl03041
]
119987674
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119987674
Spliceosome [BR:
twl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119987674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
PWI
AAA_30
nSTAND3
BDHCT_assoc
TRI4_N
AAA_16
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
119987674
NCBI-ProteinID:
XP_038688523
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All DBs
Position
21:complement(3249529..3268403)
Genome browser
AA seq
1054 aa
AA seq
DB search
MVSDSDLKTWVSDKLFSLLGYSQSAVVQYIVGITKQATTPADVLGKLLECGLPSTRETRA
FSEELFARVPRKTSAVNLYKEQEKEAAMLARKQKTYALLDADDDDDDDDDTVHVGLGQKS
SGTVASQPIKEDTQKKRFRKKIETQDDEDDEVIAQAKVERRVKRRTYEDDGSESEEERLQ
DQREREQLERNIRERDAAATRKLTESKLSRKEEDEAIRRSDALETNGIDTLRKVSRREYL
KKREHKKLEELRDDIEDEQYLFEGVKLTEAEYRELRYKKEIYELVKKRSEEDDNMGGYRM
PEAYDQDGVVNQEKRFAVAMERYRDPSAADKMNPFAEQEAWEEHQIGKATLKFGSKNRKE
ISDDYEYVFDNQIDFIKASVMDGDNYNNEVLKESVEDLRTKSALEKLQEERKTLPIYHYR
DELLQAVNDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVS
QEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERT
LSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKA
PEADYLDAAIVSVLQIHVTQEAGDILVFFTGQEEIETAEEILKHRTRGLGTKIAELIICP
IYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGM
ESLLVTPISKASANQRAGRSGRTGPGKCFRLFTAYNYHHDLDENTVPEIQRTNLANVVLT
LKSLGIHDLLNFDFMDPPPAEALLKALEMLFALSALNKLGELTKVGRRMAEFPLDPMLSK
MIVTSDKYNCSDEVISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVY
SSWKETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELSSNTNDLEAIKKSITS
GFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELK
PEWLVEIAPHYYQMKDVEDTGSRRMPRGEGRAAS
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggttagtgatagtgatttaaagacatgggtgtctgacaagttgttttcattgttggga
tattctcagtccgcagtggttcagtacattgttggaataactaagcaagcaacaacacct
gctgatgtgctgggcaaactccttgaatgtgggcttccatcaacaagagaaactcgtgcc
ttttctgaggaactttttgccagagttccccgaaaaacgtctgctgtcaatctttataag
gaacaagaaaaggaagctgctatgttagctaggaagcagaagacttatgcactgctagac
gcggacgatgatgatgatgatgacgacgacactgttcatgttggtcttggtcagaaatca
tctggtacggttgcttctcagcccattaaagaagacacacaaaagaaacgtttcaggaag
aaaatcgaaactcaagacgacgaagatgacgaggtgattgcacaagccaaagtagagaga
cgagttaagagacggacttacgaagatgatggttcagagtcagaagaggagaggttgcaa
gaccaaagagagagggagcaactagagagaaatataagagaacgcgatgctgcagcaaca
aggaagttgactgagtcaaaattatctcggaaagaggaagatgaggcaatacgaagatcg
gatgccttggagacaaatggcattgatactttaaggaaggtgtcgaggcgagaatacttg
aaaaaaagagagcataagaaattggaagaactcagagatgatatagaagacgaacaatat
ttgtttgagggtgttaagctcactgaagcagagtatcgtgaactcagatacaagaaggag
atatacgagcttgtaaagaagaggtcagaagaggatgataatatgggtgggtacaggatg
cctgaagcctatgatcaggatggggttgttaatcaagaaaagaggtttgctgtggccatg
gaacgttacagggatccgagtgctgcggataaaatgaacccttttgcagagcaagaggct
tgggaagagcatcaaattggaaaggccacactgaagtttggttcaaaaaataggaaggaa
atatcagatgactatgagtatgtgttcgacaaccagatagattttatcaaggcatcagtg
atggatggagataattacaacaatgaggtactaaaagaatcggttgaggacttaaggaca
aaatcagctttggagaagcttcaggaggagagaaaaacattaccaatatatcattatcgg
gatgagctgctccaagcagttaatgatcaccaggttcttgtcattgttggggaaacaggt
tctgggaaaaccacacagataccacagtatctccatgaagctggttatacaaagcgtgga
aaggttggttgtacacagccacggcgagttgctgctatgagtgttgctgcccgagtgtct
caagaaatgggtgtcaaacttggccatgaggttggttattctattcgatttgaagattgc
acgtcagagaagaccattttgaaatatatgacagatggtatgttgttgcgtgagtttctc
ggcgagccggatttggcaagttacagtgtggtgatggtggacgaggcacatgaaagaact
ttgtcgactgacattctatttggattagtgaaggatatagctcgatttcggcctgatcta
aagttgcttatctcaagtgctacacttgatgcggaaaagttcagtgattattttgattct
gctccgatttttaaaattccagggaggagatttccggttgagatacattatacgaaggca
ccggaagctgattacttagatgcggctattgtttctgtgctccaaattcacgtaacgcag
gaagctggagatattttggtcttcttcactggtcaggaggaaatcgagacagcggaagaa
attttgaagcacaggacaagagggctggggactaaaatcgctgaacttattatctgccct
atctatgccaacttaccaactgaacttcaagccaaaatatttgaacctactcctgaaggg
gcacgcaaggttgttcttgcaacaaatattgcagaaacctcgttaacaattgatgggatc
aagtatgtcattgatccaggtttctgcaagatgaaatcttataacccaaggactgggatg
gaatctttgctagtcactcctatctctaaggcttcagccaatcaacgtgccggtcggtct
ggacgaacaggtcctggaaagtgtttccgtttatttactgcttacaattaccatcatgat
ctggatgagaatacggtaccagaaatacaacgaaccaatcttgccaatgttgtcctaact
ctgaagagtcttggtattcatgacttgctaaactttgactttatggacccaccaccagct
gaagcattactgaaagcattggaaatgctttttgcattaagtgccttaaataagcttggc
gaattgacaaaagtgggtaggcgaatggcagaattccctcttgatcccatgttgtctaaa
atgatagtcacttctgacaagtataactgctcagatgaagtaatttccattgctgctatg
ctttctatcgggaattcaatcttttatcgtccaaaggataaacaagttcatgctgacaat
gcacgcttgaactttcacacagggaatgttggtgaccatattgctttgctcaaggtctac
agttcttggaaggaaactaattactcaacgcaatggtgttatgaaaattatattcaggtt
aggagtatgaagcgtgccagagatatcagagaccaattagagggactattggagagggtt
gaaattgaattatcatccaacacaaatgatttagaggctataaaaaagtcaataacatct
ggatttttccctcattctgcgaagcttcaaaagaatggatcttatcgaacagtgaagcat
ccgcagacagttcacatacatccaagttcgggtttggcgcaggtattgccaagatgggtt
atataccatgagttggttcttacaaccaaggaatacatgaggcaggtgactgaattgaaa
cctgagtggctggtggaaatagcacctcattattaccagatgaaggatgttgaagacacg
ggatcaaggagaatgccacgaggagagggacgtgctgcatcataa
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