Tripterygium wilfordii (thunder duke vine): 119988901
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Entry
119988901 CDS
T07256
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119988901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119988901
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119988901
mRNA degradation factors
5'-3' decay
Decapping complex
119988901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
DUF4197
Motif
Other DBs
NCBI-GeneID:
119988901
NCBI-ProteinID:
XP_038690072
LinkDB
All DBs
Position
21:5400832..5408949
Genome browser
AA seq
1361 aa
AA seq
DB search
MCIDIDTFNHVKLNYRSSMAASSNLNQVPTSSIPPYDVLGLYKPSQPQPDMSYPPPQQYP
FHFPNYPQNPHLQNHHNNIPQRSLSYPTPPLQPSPNSGGAHIMALLRTPSSSSNPESTVP
STAPVMEFPAGLVGPPRMPSSKVPRGRRLAGDTAVVEYDVDVRMPGEAQPQLEVTPITKY
GSDPQLFVGRQIAVNKVYICYGLKQGNVRVLNSNNASRALFRGHGQRVTDMAFFAEDVHL
LASVSIDGRVNVWKISEEPEEGDEPVEITGNIVIAVQIVGEGDVVHPRVCWHCHKQEVLV
VGIGKCILRIDTTKFGKGEVYSAEAPLQCPVEKLIDGIQIVGKHDGEVTDLSICQWMITR
LVSASMDGTIKIWEDRKAQPLAVLRPYDGQPVYSASFLTASDRPDHIILITGGPLNRELK
IWSLTTEEGWLLPGDADSWKCTQTLALKSSAATQVEDAFFNQVASMSHVGLLLLANAKKK
AIYVIHLEYGPNPAATRMDYIAEFTVTMPVLSFTGICDMLPRGICVPQIYCFQTQAIQQY
TLDLYQCLPPPLENVCLEMSRSNISQDASNCEELTAFDPYESKTSEVPVIASAPKPIAQV
GSSESGISVRYPPTSDSVEATSLPEIMTSNLESKSVSLAPAIGNTDIGGIRSSPLPSSPR
LSRKLSGFRMPLNSLEAGVPPSDLAAKQPSTTYSGDQQNDNTPPKLYEMPSFNNDSAKDE
SKGTQADNTNLLAFRHPTHLITPSEILMAASSSDVTSLIEGKSEVDANTQDVAVNSDGGN
AEVEVKVVGETSSCNDEFGPHGEPCSRVSENKEKFFCSQASDLGIEVARQSSAISEYNLV
EEEPQQVDSVESEILTQLSRADDEIHDSMKDMSVKFSESVVSTAVRQSPSPSSKGKKQKG
RNSQASGALSPSVLNSADSSNGPAGSSNPISVEAALPQVQEKLSQLMHMQKETQKQMSNM
VAISVSKECRKLEAALGRAIEKAVKANNDALWARMQEENSKNEKLLRERTQQMSNLFSSF
MNNDLMAMLEKVVKKEVTAIGQIVIHTVTPIIEKTIASAIADSFQRGVGDKAVNQLEKSV
NVKLEATVARQIQAQFQTYGKQALQDTLKAGIEASIIPGFETSCKAIFGQIETAFQKGMV
EHTNAAQQQFDTGHSQLAILLRDTINTASSVTQTLSTELADGQRKLFALAAAGANPNVLN
PLVTQLSNGYLGGQHEKVEGTLDPKQELSRLISECKYDEAFMIALQISDLSIISWLCYQV
DLQAMLSKKPPPLSQPVLLSLLQHLAFDINTDIPRKLDWMTSVAIVINPADETIIANAMH
FHNIIDQVYKILHNLLSSPNVTDKTRVRALIFIVDSLMMKM
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtgtatagatatagatacattcaatcacgtgaagctcaattacagatcttcaatggca
gcctcgtcaaacctaaatcaggtgcccacaagctctattcctccctatgacgtcctcggt
ttgtacaaaccatcacagcctcaaccagacatgtcgtaccctcctccccagcaatacccg
ttccacttccccaattaccctcaaaatcctcacctccaaaaccaccacaacaatatcccg
cagcggtctctctcctatccaacgccgcctttacagccgtccccgaactcgggtggagcc
cacatcatggccctcctccgtactccttcctccagttcgaaccctgagtcaactgtgcca
tccacggcaccggtgatggagtttccagcggggttagttgggccgccccgtatgccgagc
agcaaagtgccgagggggaggaggctggccggagatacagcggtggtggagtatgacgtc
gacgtgaggatgccaggagaagcgcagccgcagctggaggtcacgccgatcaccaagtac
ggctctgatcctcagctttttgtgggaaggcagattgcggtgaacaaggtgtacatatgt
tatgggttgaagcagggtaatgtgagggttcttaatagcaacaacgcgtcgagggctctg
tttcgtggtcacggtcagagggtcacagacatggctttctttgcggaggatgttcacctt
ttagctagtgtgagcatagatggacgggttaatgtatggaagatctctgaagaacctgaa
gaaggagacgagccagtggagattacaggaaatatcgtgattgctgttcaaattgtggga
gagggcgacgttgtacacccaagagtttgctggcactgtcacaaacaagaggttttggta
gttgggattggtaaatgtatcttgagaattgatactacaaaatttggtaagggtgaagtc
tattcagcggaggctcctctgcagtgtcctgttgaaaagctgattgatggaattcagatt
gttggtaaacatgatggggaagtaactgatttgtcaatatgccaatggatgatcacccgt
ttagtttctgcctcaatggatggcacgataaagatttgggaagatcgtaaagcacaacca
cttgctgtattgagaccatacgatggccaacctgtttactcagcttcattcttaactgct
tcagatcggcccgatcacattatactcatcactggtggacccctgaatagggagttgaag
atttggtccttgaccactgaagaaggctggttgctgcctggcgatgctgactcctggaag
tgcacacagactttggcattgaagagctcagcggccactcaagttgaggatgcattcttc
aatcaagtcgcatcaatgtctcatgtaggcctcctcttacttgcgaatgctaagaagaaa
gccatatatgttatacatcttgaatatggtcctaatccagcagcaacccgaatggattac
atagcagagtttactgtcacaatgccagtcttgagttttaccgggatatgtgacatgtta
cctcgtggcatatgcgttcctcaaatctattgtttccagacgcaagctattcaacagtat
actttggacttataccagtgccttccaccgcctttggagaatgtttgtttggagatgtca
cgttccaatatttcacaggatgcatctaactgtgaagaacttactgctttcgacccatat
gaaagcaaaacttctgaggttcctgtaattgcttcagcacccaaaccaatcgcacaagtt
ggtagctctgaaagtgggatttctgttaggtatcctccaacctcagattctgttgaggca
acttctttgccagaaatcatgacctcaaatttagaatctaaatctgtttctttggcacca
gcaattggcaatactgacattggtggtattaggtcatcacctcttccttctagtcctcga
ttgtctaggaaactttctggttttagaatgccattaaatagcttagaggctggtgtcccg
cccagtgatcttgctgcaaaacaaccaagtacgacttattcaggtgaccagcaaaacgat
aacacgcctccaaagttgtatgaaatgccttcctttaataatgactcagccaaagatgag
agtaaaggaactcaagctgataatactaatttgcttgcatttagacaccctacccatttg
ataacaccttctgagatattaatggctgcctcttcttctgatgttactagtcttattgag
ggaaaaagtgaggtagatgcaaatactcaagatgtggctgtcaatagtgatgggggcaat
gcggaggtggaggttaaagtagtgggtgaaacatcctcttgcaatgatgaatttggtccc
catggagaaccttgtagccgtgtttctgaaaacaaggaaaagttcttttgctcccaggct
tcagatctgggaattgaagtggcaaggcagtcctctgcaatatcagaatacaatctcgtt
gaagaggagcctcagcaagttgatagtgttgaatcagaaattctcacccaactttccaga
gctgatgatgaaatccatgattccatgaaagatatgtctgttaaattttctgagtcagtt
gtatccactgcagtaaggcaatcaccatctccaagttcgaaagggaaaaagcagaagggg
aggaattcacaagcatcaggtgcactttctccaagtgttctcaattctgcggattcttcc
aatggaccagctggtagttctaatcccatttcagtagaagctgctcttcctcaggtgcaa
gagaagcttagccagctcatgcacatgcagaaggagacccagaagcagatgtcaaatatg
gttgctatctctgtttccaaagaatgtaggaaattggaggcagctcttggacgggccatt
gagaaggctgttaaggcaaataatgatgctctgtgggctcgcatgcaagaagagaactcc
aaaaatgaaaagttattgagagaacgtacgcagcaaatgtcaaacttattctcgtcattt
atgaacaatgacttgatggctatgttagagaaagtggtgaagaaggaagtgactgcaatt
ggacaaattgtaatccatacagtcactccaatcattgagaagacaatagcttcagctatt
gccgattctttccagagaggagttggtgataaggcagtgaatcagctggagaagtctgtt
aatgtaaaacttgaagctactgttgcaaggcaaattcaggcacaatttcaaacttatgga
aagcaagcccttcaggatactttgaaagctggtattgaagcttcgataattcctggcttt
gagacctcatgcaaagcaatttttggccaaatagaaactgcctttcagaaaggaatggtt
gaacatacaaatgcagctcagcagcaattcgacactggtcattctcagttggcgatttta
ttgagggataccattaacacagcatcatctgtgactcaaaccctaagcacggaattagct
gatggtcaacgaaagctgtttgctcttgcagcagctggagcaaacccaaatgtactaaac
cccttggtcacccaattgagcaatggatatttgggtggtcaacatgagaaggttgagggg
actttagatccaaaacaggaactatcaagattgatatctgaatgcaaatatgatgaggct
ttcatgatagctctgcaaataagtgatttgtcaattatctcctggttgtgttatcaggtt
gatttgcaagccatgttgtcaaaaaagccgcctcctttgagccaaccagtgctgctctct
cttttgcaacatctggcctttgacataaacacagatataccccggaaactggattggatg
acatctgtagcaattgttataaacccggcagatgaaacgatcattgcgaacgccatgcac
tttcacaacatcattgatcaagtatacaagatactgcacaatctactcagttcacctaat
gttacagataagacccgcgttcgagctctcatattcattgtcgattccctaatgatgaaa
atgtaa
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