Tripterygium wilfordii (thunder duke vine): 119989361
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Entry
119989361 CDS
T07256
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119989361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119989361
03012 Translation factors [BR:
twl03012
]
119989361
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119989361
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119989361
Translation factors [BR:
twl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119989361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
PhoH
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
119989361
NCBI-ProteinID:
XP_038690759
LinkDB
All DBs
Position
21:complement(16784438..16800021)
Genome browser
AA seq
1162 aa
AA seq
DB search
MRNSKLRGVLLACAKSVHTLSYSNNSKNLILLLPSKRRRTTPICNLLLLLSNSSVYGNGG
ILAPEARNFSGYAVEQFSDDEYECDFEGNTASSSVANIDEWKWKLSMLLRNENEQEIVSR
DKRDRRDYEQISNLARRMGLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQR
RVESLLQEHLDRLQLSSGSVKDNSNVSKSIDQVEDLNTEENPDSFPDRSVMEKVLQRKSL
RMRNMQRAWQESPEGRRMLDFRKSLPSFKEKERLLQAIAHNQVIVISGETGCGKTTQLPQ
YILESEIESGRGAFCSIICTQPRRISAMSVSERVSAERGEPLGETVGYKVRLEGMKGKNT
HLLFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILM
SATLNAELFSKFYGGAPTIHIPGFTYPVREHYLEDVLEMTGYKLTSFNQIDDYGQEKLWK
TQKQLVPRKKKNQITTLVEDALNNSSFGNYSSRACDSLACWVPDSIGFNLIEAILCHICR
KERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLVLTCHGSMATSEQKLIFERPLAN
IRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRA
GRVQPGECYHLYPKCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPE
PLAVQNAIDFLKMIGALDERENLTNLGKYLSMLPVDPKLGKMLVMGAIFRCFDPVLTVVS
GLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNF
LSAQTLQAIHSLRKQFSFILRDTGLLDADAGANNRLSNNQSLVRAIICCGLFPGIASVVH
RETSMSFKTMDDGQVLLYANSVNARYQSIPYPWLIFGEKVKVNTVFIRDSTGVSDSIMIL
FGGALCHGVQPGHLKMLGGYVDFFMDPILADCYLKVKEELDKLLQKKLQDPSLDIFKEGK
YLMLAVQELVSGDQCEGRFVFGRESKKPKVSSEDRFTKDGTNPKSLLQTLLMRAGHSPPK
YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAEKDAAIEALAWLTHTSDNVRDENDDSP
PDVTNNMLKLLGKRRRSKGRPG
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaattccaagctgagaggtgttcttctggcatgtgccaagtccgttcacactctt
tcgtacagtaacaacagcaagaaccttattcttcttcttccttcgaaacgacggcggacc
actcctatctgtaaccttctgctgctactctccaattcatcagtatatggtaatggcggg
attttagctcccgaagcgcgaaatttcagtggctatgcggtcgagcagttctctgacgat
gagtacgagtgcgatttcgagggcaatacggcatcatcttcagttgctaacattgacgaa
tggaaatggaaactcagcatgctactacgcaatgaaaatgagcaagagattgtgtctaga
gataaaagagataggagagactatgagcaaatatcaaaccttgcaaggagaatggggcta
tatagtgaaatgtatggaaaagtggtggttgcaagcaaggttcctcttcctaactatagg
ccagatttggacgataaacggccacaaagggaggtggttatcccattaagcttgcaaagg
agggtggaaagtttattgcaagaacaccttgatagacttcagttaagttctggaagtgtc
aaagacaactcaaatgtttccaagtccattgaccaggttgaagatttgaatacagaggag
aatcccgattcttttcctgatcgatcagtcatggaaaaggttcttcagaggaagagtttg
agaatgcgtaatatgcaaagggcttggcaggaatcacctgaaggcaggaggatgttggac
ttccggaaatctttgccttcatttaaggaaaaggaacgactgcttcaagcaatagcacat
aatcaggtaatagtaatatctggggagactggatgtggtaaaaccactcaacttccgcag
tatattttagaatctgaaatagaatctggtcgtggagctttctgcagcataatttgcact
cagcctcgaaggatatctgctatgtctgtttctgaaagagtgtctgcagagagaggagag
cctcttggtgaaacagttggctataaagttcgattagaaggtatgaaaggaaaaaatacc
catctgcttttttgtacgagtggtattttacttcggcggctgctaagtgaccgcaacttg
gatggcataacccatgtttttgttgatgaaattcatgagcgaggcatgaatgaagacttc
ctgttaattgtgttgaaggatctgcttccacggcgtcgcgatttgagattaatattaatg
agtgcaactctgaatgctgaattgttttctaagttctatggtggagcaccgacaattcac
attccaggctttacatatcctgtaagagaacactatttagaagacgtactggaaatgact
ggatataagttgacttcttttaaccaaattgatgattatggccaagagaaattgtggaaa
acacaaaaacagctggtgccacggaagaagaaaaatcagataactactcttgttgaggat
gccctcaataactctagctttggaaactatagctccagggcatgtgattcgctggcttgc
tgggtgcctgacagtataggatttaatcttattgaggcaattctatgccatatatgtcga
aaagaacgaccaggggctgtgttagtattcatgactggctgggaggacattagctgtttg
agggatcaacttaaagctcatccgcttttaggagatccaaacagggttctagttttaaca
tgccatggttctatggcaacatctgaacagaaactcatatttgagagaccccttgctaac
atccgtaaaatagttctggctacaaatatggcagaggcaagtattacaattaatgacgtt
gttttcgttgttgattgtggaaaagcaaaagaaaccacctatgatgctttgaacaatact
ccttgtctgctaccttcttggatatctcaagcatctgctcggcaaagaaggggcagggct
ggccgtgtgcagccaggcgaatgttaccatctatatccaaaatgtgtttatgaagctttc
gctgaatatcaacttcctgaactgttacggactcccttgaattctctttgcttgcaaatc
aaaagcttgcaggttgggagtataggagaattcttgtcagctgccctgcagccaccagaa
cccttggctgttcaaaatgctattgatttcttgaaaatgattggggcactggatgagaga
gagaatttgacaaatcttggaaaatatttgtcaatgcttccagtagatcccaagctggga
aaaatgttggtcatgggtgcaattttccgctgctttgatcctgtcttaactgtagtatct
gggcttagtgtcagggatcctttccttttgcctcaagacaaaaaggatttggcagggaca
gcgaaatccagattctctgcaaaagactacagtgatcacatggctcttgttcgtgcttac
gaaggatggaaagatgcagagagggaaggttcagcatatgagtattgctggagaaatttc
ctctctgcacaaacgcttcaggccatccattctcttcggaagcagttcagtttcatctta
agagatactggccttttagatgctgatgcaggagccaacaacagattaagtaataaccag
tcattggtgcgtgcaatcatatgttgtgggctctttcctggcatagcttctgttgtgcac
agggagacgtccatgtctttcaaaactatggatgatggccaagttctattatatgcaaat
tctgtgaatgcacgctatcagtcaatcccttacccatggctgatttttggtgaaaaagta
aaggtcaatacagttttcattcgcgattccactggtgtatctgattcaataatgatcctt
tttggtggtgcactgtgccatggggtacagcctggacatttgaaaatgttgggagggtat
gttgatttcttcatggatccaattttagcggattgctatttgaaggttaaggaagaactc
gataagcttcttcagaagaagcttcaagatccgagcctcgacattttcaaggagggaaag
taccttatgctggccgttcaggagctggtatcaggagatcaatgtgaaggaagatttgtt
tttggccgtgaaagcaagaagcccaaggtgtctagtgaagacagatttacaaaggatgga
acaaatccaaagagcttgctacaaactctgttgatgagagcaggtcattccccaccaaaa
tacaaaacaaagcaccttaagacaaatgagtttagggcgctggttgaattcaagggaatg
cagtttgtggggaaacccaaaagaaacaagcagctagcagaaaaggatgctgccatagag
gcattggcctggttgacacacacttctgacaatgtcagagacgaaaatgatgactcccca
cctgatgttacaaacaatatgctaaaacttctagggaagcgtcgaagatcaaagggtcgc
cctggttga
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