KEGG   Tripterygium wilfordii (thunder duke vine): 119990947
Entry
119990947         CDS       T07256                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
twl  Tripterygium wilfordii (thunder duke vine)
Pathway
twl03030  DNA replication
twl03410  Base excision repair
twl03420  Nucleotide excision repair
twl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:twl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    119990947
   03410 Base excision repair
    119990947
   03420 Nucleotide excision repair
    119990947
   03430 Mismatch repair
    119990947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:twl03032]
    119990947
   03400 DNA repair and recombination proteins [BR:twl03400]
    119990947
Enzymes [BR:twl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     119990947
    6.5.1.6  DNA ligase (ATP or NAD+)
     119990947
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     119990947
DNA replication proteins [BR:twl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    119990947
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     119990947
DNA repair and recombination proteins [BR:twl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     119990947
   NER (nucleotide excision repair)
    Other NER factors
     119990947
   MMR (mismatch excision repair)
    Other MMR factors
     119990947
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114
Other DBs
NCBI-GeneID: 119990947
NCBI-ProteinID: XP_038693016
LinkDB
Position
22:complement(11380997..11391578)
AA seq 809 aa
MLTLRFTTGSLCRHRYSIKSLPPPPLSLSSSFFTFSCKPLSLFLNPNSVHNFTCTMSSAP
KKSAFDVLMSKSRAPNSKKETTNSPKKRKTLDSTPTGNRTKILGSVDNPQVSDASAKTPD
AIENSSQKPQDSSDTKSSQETNINSSKSVPVKENKKGRVEDMIAELKSKIPLLKKKAGDF
DPKLMACWEKGEKVPFIFLCLALDLISNESGRIVITDIVCNTLRTVMDTTPEDLVAVLYL
LANRIAPAHEGLELGIGEPSLIKALAESYGRTEKQIKNQNKELGDLGLVAKGSRSSQLMM
RKPNALTIAKVLDTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQAKLRIG
LAEQTLLAALGQAAVYTEKHSKPPLDIQSPLEEAVKIVKQVYSVLPVYDKIVDALLNGGV
WNLSKTCSFMPGVPVGPMLAKPTKAISEILNKFQDIEFTCEYKYDGERAQIHYMENNSVE
IYSRNAERNTGKFPDVVATISRLKKSSVKSFILDCELVAYDREKQKILPFQILSTRARKN
VNLSDIKVEVCIFAFDMLYLDGKPLIQEQLKVRRERLYDSFEKEPGYFQFATATTSNDLE
EIQKFLDASVDNSCEGLIIKTLDRDATYEPSRRSNNWLKLKKDYMESIGDSLDLVPIAAF
HGRGKRTGVYGAFLLACYDGNNEEFQSICKIGTGFSEAMLEKLSASLLSKVIPGPKPYYR
FADTINPDVWFEPTEVWEVKAADLTKSPVHRAAIGIVDSDKGISLRFPRLLRVREDKTPE
QASSSEQVAEMYSAQKVNHSKNQEEEDDD
NT seq 2430 nt   +upstreamnt  +downstreamnt
atgctcactctccgcttcactactggctctctctgccgccatcgttactcaatcaaatct
cttcctcctcctcctctttctctttcttcatcgttcttcacattctcctgtaagccacta
tctctcttcttaaaccctaattctgtccataatttcacttgcacaatgtcatctgccccc
aagaaaagcgccttcgatgtcctaatgtccaaaagccgcgctcctaattcgaagaaagag
actacaaattctcccaagaaacgtaaaaccctagactctacccctaccggtaacagaacc
aaaatcctaggttcggtcgataatcctcaagtttcagatgcatcagccaagacgcctgat
gcaattgaaaattcttctcagaaaccccaagattccagcgacaccaaatcgagccaagaa
actaacatcaatagttcaaaatctgtccccgttaaggagaacaaaaaggggcgcgtagaa
gacatgattgcggagctgaagagcaagattccgctgctgaagaagaaggcgggagacttt
gaccccaaattgatggcctgttgggagaagggggaaaaggttccgtttatttttctttgt
ttggcgttagatttgatctcaaacgagagtggaagaattgtgatcacggatattgtatgc
aatacgttgaggactgttatggataccactcccgaggatttggtggccgtcttgtatctt
ttggcgaataggattgcccctgcacatgagggattggagctggggataggggagccatcg
cttattaaggcactcgcagagtcatatggaagaaccgaaaagcagattaaaaaccaaaac
aaggaattgggggatttaggccttgttgcgaaaggaagccgttcatctcaacttatgatg
cgcaagcccaatgcattaacaattgccaaagttttggatacatttcggctcattgcgaag
gaatctgggaaagatagccaagagaagaaaaagaaccatatcaaggggcttcttgttgca
gctactgactgtgaacctcaatacttaattcgcctccttcaggcaaagttgcgaatcgga
ttggcagagcagactctgttagctgcattaggacaagctgctgtatatactgaaaagcat
tctaagcctcctttggatattcagtctcctttagaagaggctgtaaagattgtaaaacaa
gtatattctgtgctacccgtctatgataagatagtggatgctcttcttaatggcggtgta
tggaacctctcaaaaacatgtagctttatgccaggtgttccagttggaccaatgctggca
aaaccaaccaaagcaatatctgaaatcttaaataaattccaggatatagaatttacttgt
gaatacaagtatgacggagagcgcgctcagatacattatatggagaacaactcggttgag
atttacagtcgaaatgcggaacgaaacactgggaagtttcctgatgttgttgctacaatc
tcaaggttaaaaaagtcctctgtgaaatcatttattttggattgtgaactagttgcttat
gacagggagaaacaaaaaattctgcccttccagatccttagtactcgagcacgcaagaat
gtgaatttaagtgacatcaaggttgaagtttgcatatttgctttcgatatgttgtatctc
gatggcaaaccactcattcaggaacaactaaaagttcgtagagagcgactttatgactca
tttgagaaagaacctgggtattttcagtttgcaactgcaacaacgtcaaatgatcttgag
gaaatacagaagtttcttgatgcttctgttgataatagttgtgagggtttgattatcaaa
actctagatagagatgctacatacgagccttcgagacggtcaaacaattggctaaaacta
aagaaagattacatggagagtattggggactcgctagatctagtacctattgctgctttt
catggtcggggaaaacgcactggtgtatatggcgcttttcttcttgcttgttatgatggc
aacaatgaagaattccaaagcatctgtaaaatagggactggattttctgaagcaatgctt
gaaaaactttcagccagtcttctttctaaagtgattccaggaccaaagccatactacagg
ttcgcagatacaatcaatccagatgtgtggtttgaacccactgaggtttgggaggttaaa
gctgcagatctgaccaagagtcctgttcatcgtgctgcaattggaatagtggattccgat
aagggtatttctctccgatttccacgtcttcttcgtgtccgtgaagataaaactccggaa
caagcctcttcatctgagcaggtagctgagatgtatagtgctcagaaagtcaatcactca
aaaaatcaagaagaagaagatgatgattaa

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