Tripterygium wilfordii (thunder duke vine): 119991056
Help
Entry
119991056 CDS
T07256
Name
(RefSeq) spliceosome-associated protein 130 A isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119991056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
119991056
03041 Spliceosome [BR:
twl03041
]
119991056
03036 Chromosome and associated proteins [BR:
twl03036
]
119991056
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
119991056
Spliceosome [BR:
twl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119991056
Complex B
119991056
Complex C
U2 SnRNP specific factors
119991056
Chromosome and associated proteins [BR:
twl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
119991056
TFTC complex
119991056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
DUF7629
Motif
Other DBs
NCBI-GeneID:
119991056
NCBI-ProteinID:
XP_038693171
LinkDB
All DBs
Position
3:11922303..11934403
Genome browser
AA seq
1388 aa
AA seq
DB search
MAVTEEECSSAKSRSSSSATSSRRHYLAKCVLRGSAVLQVVYGRFRSPSSLDIVLGKESS
IELVIIGEDGIVQSVCEQPVFGTIKDLAVVRCNEKFNMQNPRMRGKDLLVAISDSGKLSF
LTFCNEMHRFYPLTDVPLSNPGNSRHRLGRMLAVDSSGCFVAVSAYEDQLAIFSLSMSGG
IDIIDKRILYPPEDEADAGGGFHRTNIRGTIWSMCFISKDPSQPSKEHNPVLAVILNRRG
APVNELLLLDWDMGAQAINVVSQYVEEGSLAHDIIDVPHSYGYAFLFRVGDVLLMDLRDV
HNPSCICRTSLNFLPATVEEQIVVEESCRVHDDDEGLFNVAACALLELRDYDPMCIDSDD
GNVKSSSNYACSWSWEPEKNINPRMIFCVDSGEFFMIDICFDGSDLKVNLSECLYKGLPC
KALLWVEGGFLAAFVEMGDGVVLKVDNGRLLYMSPIQNVAPILDLSVVDYQEEKRDQMFA
CCGVAPEGSLRIIRSGISVEKLLKTSPDYQGISGTWSIRMKVNDLYHSFLVLSFVEETRV
LSVGVSFTDVTDSVGFQPDVCTLACGLVGDGLLVQVHQNAVRLCLPTIACHSEGVALSTP
ICASWFPNNVSISLGSVGQNLIIVSTSNPYFLHILGVRLHSTLQYEIYEMQQLRLQHELS
CISIPQQCFELTQLSSPLNLLDKKHATAPSSGIDVGNTFIIGTHKPSVEILSFLPNQGIR
VLATGIISLTNTMGTAISGCIPQDVRLVLVDRFYVLSGLRNGMLLRFEWPSPSTLSSIEL
QSCYPYSVVNVDTATMNEAAIYFVPRYGVDLTDKAMTNLPVNLQLIATRRIGITPVFLVP
LSDSLDADVIALSDRPWLVQTARHSLSYASISFPPSTHAAPVCSAECPKGILFVAESSLH
LVEMVHSKRLNVQKFHIGGTPRKVLYHNQSKLLVVMRTELSNETSSSDICCVDPLSGSVL
SSFKLEVGETGKAMEFVRVGNELVLVVGTSLSSGAAIMPSGEAESTKGRLIVLCLEPFQN
SDSASMTSCSKAGSSSQLTSPFHENVGYATEQLSSSSLCGSSDDNSCDGIKLEEAEPWQL
RLAYSTTWPGMILAICPYLDHYFLASSGNAFYVCGFPNDNPQRVRRFAVAKTRFMIMSLT
AYFTRITVGDCRDGILFYSYHEDARKLEQLYCDPSQRLVADCTLMDIDTAVVSDRKGSIA
VLSCSDRLEVDASPECNLTICCAYYMGEIAMRIGKGSFSYRLPADDVLKGCDPISNVDPS
QRTIIASTLLGSVVIFIPLSRLFFFREEHELLEAVQARLVIHPLTAPVLGNDHNEFRSRE
IPVGVPKILDGDMLAQFLELTSMQQEAVLSSPLPAIDMGKSSSKSPFLGPISVDPVVQLL
ERVHYALN
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcacggaggaagagtgttcatctgcgaagtctcgatcctcctcatcggcaacg
tccagcagacggcactacctcgccaagtgcgtcctcagggggagcgctgtgctccaggtc
gtatatggccgtttccggtctccttcctcccttgacatcgttttgggcaaggaatcatcc
attgagctggtgataatcggtgaagatgggattgtacagtctgtttgtgagcagcctgta
tttggaacaattaaagacctcgctgtcgtacgatgcaatgagaagttcaatatgcaaaat
ccacggatgagggggaaagacttattggttgcaatatctgattctgggaaactctcattt
ctcacattttgcaatgaaatgcacaggttttatccgctgactgatgttccactttccaat
cctggaaactcgaggcatcggcttggaagaatgctcgctgttgattctagtggctgtttt
gttgctgttagtgcctatgaagatcaattggctattttctctctttcaatgtctggtggc
attgatattattgataagaggatactttatcctcctgaagatgaagcagatgcaggagga
ggcttccataggaccaacatacgtggcaccatatggagcatgtgctttatatcaaaagat
ccgagtcaaccaagtaaggagcataaccccgtactagccgttattctgaataggagggga
gcacctgtaaatgaactcttgttattggattgggatatgggagcacaggctataaatgtt
gtttcccagtatgttgaagaggggtcactagcacatgacatcatcgacgttccgcattct
tatggatatgcatttctttttagagttggtgatgttcttttaatggatcttagagatgtt
cacaacccatcttgtatctgtagaacaagcttaaacttcttacccgctacagtggaggag
caaattgtcgtggaagagtcctgtagagttcatgatgatgacgaaggtttgttcaatgtt
gctgcatgtgctttacttgagctcagggattatgaccccatgtgtatagatagtgatgat
ggaaatgttaaatcatcctccaactatgcttgctcgtggagttgggaaccggaaaagaat
ataaatccaaggatgattttttgtgtggactcaggagagttttttatgattgacatttgt
tttgatggcagtgatctcaaagttaatctctctgagtgtctgtacaaaggtttaccttgc
aaggcacttttgtgggttgaaggtggattcttagcagcatttgtggagatgggggatggg
gtggtccttaaagtggataatggaagactactttatatgagtcctattcagaatgtcgca
ccaatcttggatttgtcagttgtggattaccaggaggagaagcgtgatcagatgtttgca
tgctgcggagtggcaccagagggatcattaaggattattagaagtggtataagtgtagag
aagctattgaaaactagccctgactatcaaggtatatctggcacttggagtattcgcatg
aaagttaatgatttatatcattcttttctcgttctctcatttgttgaagagacaagggta
ttatctgttggtgttagcttcactgatgtgactgattcagttggcttccagccagatgtc
tgtactttggcatgtggacttgtaggtgatggtttgctggtccaggtacaccaaaatgct
gtccggctctgtctacccaccatagcctgccactctgaaggtgtagctttgtctactccg
atttgtgcatcttggttcccaaataatgtaagtatcagcttggggtcagttgggcagaat
ttgataattgtttctacatctaatccgtacttccttcatattcttggggtcagattacat
tcaactttgcaatatgaaatatatgaaatgcaacaactgagattgcagcatgagttgtcc
tgcatttccatacctcagcagtgttttgagctaacacaattaagctcacctctcaatctg
ttggataaaaaacatgcaactgctccatcttctggaatcgatgttggtaatacctttata
attggaactcataagccttcagtggaaattttatctttcctacctaatcaaggaataaga
gttcttgccactggaataatatcattaacaaacactatggggactgcaatcagcgggtgc
atccctcaagatgtaaggcttgtactagttgatcggttttacgttctctcaggtttgagg
aatggaatgctgcttcggtttgagtggccttctccctccactttgtcttctatagaatta
cagtcttgctatccttattctgtggtaaatgtggatacagctacaatgaatgaagctgca
atttattttgtgccacgatatggtgttgatttaactgacaaagcaatgactaaccttccg
gttaatcttcaattgattgccactcgtcgcattggcattactcctgttttcctggtccca
ctgagtgattcgcttgatgcagatgtgattgctcttagtgataggccatggttggtgcag
actgcaaggcacagcctctcttatgcttccatttcatttccaccttcaacacatgcagct
cctgtatgctctgctgaatgtccgaagggtattttgtttgttgcagagagcagtctacat
ttggtggagatggtgcacagtaagaggcttaatgtgcagaaatttcatattggaggaact
ccacggaaagttctgtatcataatcaaagcaagctattggttgtgatgagaactgagttg
agcaatgaaacgtcttcatctgatatatgctgtgttgatccccttagtggttcagtgttg
tcatcctttaagcttgaagttggagaaactggaaaagccatggagtttgtgagggttgga
aatgaactggttctggttgttggaactagtctttcttctggtgcggccattatgcccagt
ggcgaggctgaaagtacgaagggacgcctaattgttctctgccttgaaccctttcaaaat
tcagatagcgcttcaatgacatcttgttcgaaggcagggtcttcgtctcaacttacttca
ccatttcatgaaaatgttggatatgccacggaacagctttcaagcagtagtctctgtggt
agctcggatgacaatagctgtgatgggataaaactagaagaagctgagccatggcagctg
cgattggcttactcaaccacatggcctggaatgatacttgcaatctgtccatatcttgat
cattacttcttggcatcttctggaaatgctttttatgtttgtggatttccaaatgataat
ccgcagagggtgaggaggtttgctgtagcaaagacacgttttatgataatgtcactcact
gcatattttactagaattaccgttggtgactgccgagatggcatccttttctattcttat
catgaggatgccagaaaattggagcaactttactgtgatccatcgcagaggttagttgct
gattgcacgcttatggatattgacactgccgttgtttcagatcgtaagggaagcattgct
gtcttgtcatgttctgatcgtttagaagtggatgcaagtccagaatgcaacctaacgata
tgttgtgcttattatatgggcgagatagccatgcgcattgggaaggggtcattttcatat
aggcttccagccgatgatgtgttgaagggttgtgatcctatttcaaatgtcgatccatct
cagagaactatcattgccagtacactactaggaagcgtagtaatctttattcctctatca
agattattttttttcagggaagaacatgaactcttggaagcagtccaagctaggcttgtg
attcatccgttgactgctcctgttttagggaatgatcataatgagttccgaagccgtgaa
attccggttggggttcccaagattctcgatggtgatatgctggctcagttcttggagctt
acaagtatgcaacaagaggctgtattatcttcacctcttcccgcaatcgacatgggaaaa
tcgagttctaaatcacctttccttggtcctatctctgtcgatccagttgtgcaacttctt
gaacgggtccattatgccctaaattaa
DBGET
integrated database retrieval system
