Tripterygium wilfordii (thunder duke vine): 119993440
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Entry
119993440 CDS
T07256
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03013
Nucleocytoplasmic transport
twl03015
mRNA surveillance pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119993440
09122 Translation
03013 Nucleocytoplasmic transport
119993440
03015 mRNA surveillance pathway
119993440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119993440
03041 Spliceosome [BR:
twl03041
]
119993440
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119993440
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119993440
Spliceosome [BR:
twl03041
]
Complex C
Other components
EJC/TREX
119993440
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119993440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
119993440
NCBI-ProteinID:
XP_038696522
LinkDB
All DBs
Position
23:complement(11889210..11895082)
Genome browser
AA seq
428 aa
AA seq
DB search
MGESRENEAYEEELLDYEEEEEKAPDSVGAKVNGEGAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSALQQIDSGATGVNALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPQIVVGTPGRILA
LTRDKDLSLKEVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSSYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatcaagagagaacgaagcatacgaagaggagcttctcgactatgaagaagag
gaagagaaagccccggattcagtcggtgccaaagttaatggcgaaggtgccaaaaagggc
tatgttggaatacacagttcaggattcagagacttcctcctgaagccagagcttctccga
gctattgtggattcgggatttgagcatccttctgaagtgcaacatgagtgtatccctcaa
gccatcttgggcatggatgtcatctgccaagctaaatcagggatgggaaagactgctgtt
tttgtgctgtctgcattgcagcaaattgattctggtgcaactggtgttaatgctcttgtt
ttatgtcacacgagagagttagcttaccagatttgtcatgagtttgagaggttcagtact
tacttgcctgatatcaaagttgctgtcttttatggtggtgtcaatatcaagactcacaaa
gatctactgaagaatgaatgcccccaaattgttgttgggacacccggaaggattttggca
ttgactagagacaaagatctttccttgaaggaagtgaggcatttcatcctcgatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtacaggagattttcaaaatgacc
cctcatgacaagcaagttatgatgttctctgcgacgcttagcaaagaaatccgcccagtt
tgcaagaaattcatgcaagatccaatggaaatttatgtagatgacgaggccaagttaacc
cttcatggtcttgtacagcactacatcaaattgagtgagctggagaagaatcgcaagttg
aacgaccttcttgatgcattggactttaatcaggttgtcatctttgtcaagagtgtgaac
agagcggccgagctgaacaagttactggtggagtgtaatttcccctcaatatgcatccat
tcaggcatgtcccaagaagaaaggttgatgcggtacaagggtttcaaggagggtcataaa
aggattctcgtggctactgatttggttggtagaggaattgatattgaacgtgtcaacatc
gtcatcaactatgacatgccggattctgctgatacttacctgcatagggttggtagagct
ggtaggtttggcacaaagggtctggcaataacgtttgtctcctcagcttcagactccgat
gttcttaatcaggttcaagagaggtttgaggtggatataaaggagcttcctgagcaaatt
gatacctcttcatacatgccgtcttag
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