Tripterygium wilfordii (thunder duke vine): 119993857
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Entry
119993857 CDS
T07256
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119993857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119993857
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119993857
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119993857
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
119993857
NCBI-ProteinID:
XP_038697076
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All DBs
Position
23:complement(12141481..12143020)
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AA seq
278 aa
AA seq
DB search
MSIVPKGDLPVHIREVWDDNLEEEFALLRDIVDRFHYVAMDTEFPGVVLRPLGPFKNIND
CNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKCCIWQFNFREFNVSEDIFANDSIE
LLRQCGIDFKKNSEKGIDVKRFGELLMSSGIVLNDDVHWVTFHSAYDFGYLLKLLTCRSL
PDSQAGFFDLINIYFPMIYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLT
ACTFRKLRDNFFNGSTEKYAGVLYGLGVDNEKSTNFKE
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattgtacccaagggcgaccttcctgtccatattcgagaagtctgggacgataat
ctcgaggaggagtttgctttgcttcgagatatcgttgatcgttttcactatgtggctatg
gacactgagtttcctggggtggttctacggccactgggacctttcaagaacatcaatgac
tgcaactaccagactttgaaagacaacgtggatatgttgaagttgatccagttgggtctc
acattttcggatgagaatgggaatttacccacttgcggaactgataagtgttgcatttgg
cagttcaattttcgcgaatttaatgtgagcgaagatatatttgctaatgattcaattgaa
ttgttacgccagtgtggtattgattttaagaaaaatagcgagaaggggattgacgtgaag
cgctttggcgagctcttgatgtcttcagggattgtcttgaatgatgatgttcactgggtt
acttttcacagtgcttatgatttcgggtacttgcttaagctgttgacctgccggagtttg
cctgactcacaggcaggattctttgatttgatcaacatttatttcccaatgatttatgac
atcaagcatatgatgaagttctgcaacagtcttcatggtgggctaaacaagctcgcggag
ttgttggaggtggaaagggttggtgtatgtcatcaggcaggctccgatagtttgctcacg
gcgtgcacatttaggaagctgagagataacttcttcaatggctcgactgagaagtatgct
ggtgttttgtatggtcttggtgttgacaatgaaaagagtactaattttaaggaataa
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