Tripterygium wilfordii (thunder duke vine): 119995900
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Entry
119995900 CDS
T07256
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119995900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119995900
Enzymes [BR:
twl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
119995900
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119995900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
AAA_24
ATP_bind_1
ABC_tran
SRPRB
FtsK_SpoIIIE
AAA_29
GTP_EFTU
AAA_10
Motif
Other DBs
NCBI-GeneID:
119995900
NCBI-ProteinID:
XP_038698300
LinkDB
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Position
4:complement(6289546..6296214)
Genome browser
AA seq
438 aa
AA seq
DB search
MAYTGTGTGTGTPVLATTKQVKLDKESELRIEVANDTPLRLRVLSGTAEIFGSELAPEIW
LTFPPRLKFAVFSWFGATIEMDGATETDYTADETPMVSYVNVHAVLDGRRNRAKASPSTD
PNASQGPRVIVVGPTDSGKSTLSKMLLSWAAKQGWKPTYVDLDIGQGSITIPGSIAATPI
EMPIDPLEGIPLEMPLVYFYGHTTPSQNVDLYKVLVKELAQVLERQIAGNAESRAAGMVI
NTMGWIEGVGYELLLHAIDTFNANVVLVLGQEKLFSMLRDVLKNKPNVDVVKLQKSGGVV
SRSAKVRQKTRSYRIREYFYGIGNDLSPHSSIANFSDLSIFRVGGGPQAPKSALPIGADR
VADPLRLAPVEINRDMLHLVLAVSYAQEPDQILSSNVAGFIYVTDIDMQRRKLTYLSPAA
GALPSKYLIVGSLTWTET
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgtataccggcaccggcaccggcaccggcacgcctgtactggcgacgactaagcag
gtgaaattagacaaggagagcgagctcagaattgaagtcgctaacgacacgcctctccgc
ctacgcgttctctctggcaccgctgagatctttggctccgagcttgcccccgaaatctgg
ctcaccttccctcctcgtctcaaattcgccgtttttagttggtttggagccacaattgaa
atggatggggctactgaaactgattatactgcagatgagacaccgatggtgagttatgta
aatgtgcatgctgtactagatggtcgtagaaaccgtgctaaagcatcaccatccacagat
cccaatgcttctcagggcccaagggtgattgtggtgggacccacagattctgggaagagc
acattgtcaaagatgcttctgagttgggcagctaaacagggctggaaacctacttatgtg
gacttggatataggccaaggttccataacaattcctggatccattgcagccacaccaatt
gaaatgcctattgatcctctggaaggaattcctttggaaatgccccttgtttacttttat
gggcacacaactcctagtcaaaatgtagacttgtacaaggtgcttgtgaaggagcttgct
caggtactagagagacaaatcgctggaaatgctgaatctcgtgctgcaggcatggtgatc
aataccatgggatggatagaaggtgttggctatgagctactcctccatgcaattgataca
ttcaatgctaacgttgtcttggttttgggccaggaaaaactcttcagcatgctgagagat
gtgctcaaaaacaaacctaatgtagatgtcgttaaacttcaaaagtcaggtggtgttgtg
tcgaggagtgcaaaagtacgccagaagacaaggagctataggataagggaatatttttat
ggcattggaaatgatctctccccacattcaagtatcgcgaatttcagtgacttgtccata
tttcgggttggtgggggaccacaggccccaaagtcagctcttcccattggggcagatcgg
gttgcagaccctctgagattagctcctgttgaaatcaaccgagatatgttgcatctagtt
cttgctgtttcatatgcccaagaacctgaccagattctttcaagtaatgttgccggattt
atctacgtcacagacattgacatgcaaaggaggaaactcacgtacctttcacccgctgct
ggagcactcccaagtaaatacttgattgtgggatccttgacatggactgagacatga
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