Tripterygium wilfordii (thunder duke vine): 119996546
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Entry
119996546 CDS
T07256
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119996546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twl03400
]
119996546
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119996546
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
119996546
NCBI-ProteinID:
XP_038699147
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Position
4:3592957..3604262
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AA seq
1106 aa
AA seq
DB search
MQRHTQKSILSFFQKPSPVNQKKGPGYSLNGGGGLEFQAEQPHQKSVMLNQPPVQNAVDS
SLEIRGTDTPPEKVPRQILPAGFVVNEDSGGSSLFSSIMHKFVKVDDKEKPKQRNQVHSS
SSNICLVSADLTKPVEFPKDGGTTQHFKKDNVSNSNCMVDQGSILPTAVDDDAFGSHTPG
LRPLVPRLKRDKDDSAMFEDKSYHSSLDATKRVKLLRDSTALNKKCEEISDTASKFEWLD
PSLIRDSNGRRPGDALYDKKTLLIPPDSLKKMSASQKQYWSIKSQYMDVVLFFKVGKFYE
LYELDAELGHKELDWKMTFSGVGKCRQVGISESGIDEAVQKLVARGYKVGRIEQLETSDQ
AKARGANSVISRKLVHVVTPSTIVDGNIGPDAVHLLALKEDNQGQDNGSNVFGFAFVDCA
ALRFWVGSIKDNASCAALGALLMQVSPKEVIYDSRGLSKEAQKALRKYSGTGSTALQLTP
VLADNDFVNAYEVRNTIQLRGYFKGSSIPLNNQLDGLEHHDIAFGALGGLICHLSRLMLD
DVLRNGDILPYQVYRGCLRMDGQTLVNLEIFNNNADGGSSGTLFKYLDSCVMSSGKRLLR
SWISHPLKDVDGINNRLNVVEDLMAHSELMLVISQYLRKVPDIERLLGRVKASVQASSHL
LPMIGKKVLKQRVKVFGLLVKGLRVAVDLLVLLQSEGKLVLSLSKNFKLPKLEGDDGLDK
LLNQFIAAVDSDFSNYQNHDVTDSDAETLSILIELFIEKAAQWSEVIHAINCIDVLRSFA
FTASTALGVMSRPVILPQSKTSFSLGSLGPLLKIKGLWHPFALGENGGMPVSNDLCLGGD
SDGYNPRTLLLTGPNMGGKSTLLRATCIAVILAQLGCFVPSEICVVSLVDIIFTRLGATD
RIMTGESTFLVECTETSSILQNATQDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEKVDC
RLLFATHYHPLTKEFASHPHVIMQHMSCAFKSKPEGLSKGEQELIFLYRLTNGACPESYG
LQVALMAGIPKPVVEAALQGGQLMKKSIGESFRSSEHRSEFSTLHEGWLKTLLNVSLGGD
CNFDGDDDAYDTLFCLWHEVKNKYRH
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccacacacagaaatcgatactttcgtttttccagaaaccctcgccggtgaac
cagaaaaaggggcccggctactctctcaatggaggcggaggtcttgagtttcaagcggag
cagcctcaccaaaaatcggtgatgttgaatcaacctccggttcagaatgcggtggactca
tccttggaaattagagggacggatactccgcctgagaaggtgccgcgtcagattttgcca
gcgggcttcgtcgttaatgaggactctggaggatcttctctcttctccagcatcatgcat
aagtttgtcaaggttgacgataaggaaaaacctaagcaaaggaaccaggttcatagtagt
tcctcaaacatttgcttagtgtctgctgacttgactaagcctgtagaatttcctaaagat
ggtgggactactcaacattttaagaaggataatgtatccaattctaattgtatggttgat
caaggatctatcttacctactgcagttgatgatgatgcttttgggtctcacacacctggc
ttgagacctctagttcctcgtttgaagcgggataaggatgatagtgctatgtttgaggat
aagagttatcattcctctttggatgctaccaaaagagtaaaacttcttcgagattcaact
gctttgaataagaagtgtgaggaaatatctgatacagctagcaagtttgaatggcttgac
ccttctctgattagagactccaatggaagaaggccaggggatgccctttatgataaaaag
acccttcttataccgcctgattctttgaagaaaatgtctgcatcacagaaacaatattgg
agcatcaaatcacaatacatggatgttgtccttttcttcaaagtgggaaaattctacgag
ctctatgagttggacgctgaacttggtcacaaggagttggattggaaaatgacatttagc
ggggtggggaaatgtcgtcaggttggtatctcagaaagtgggattgatgaggctgttcaa
aaactggttgctcggggatataaagttggccggatagagcagttggagacgtctgatcaa
gcaaaagcaagaggagcaaattctgtgatttcaagaaaattagttcatgtggtcacaccg
tcaaccatagtagatggtaatattggacctgatgctgttcatcttcttgcactaaaagag
gataaccaagggcaagataatggttcgaatgtatttgggtttgcgtttgttgactgtgct
gctttacgattttgggttggttccattaaagataatgcttcctgcgcggctttgggggct
ttactgatgcaggtctcacctaaagaagtcatatatgacagtcgaggcttgtccaaagaa
gctcagaaagcactgaggaagtactccgggactggttctacagcattgcagctgacacct
gtgttggcagataatgattttgtcaatgcctatgaagttagaaatacgattcagttaagg
ggttatttcaaagggtcttctattccattgaacaatcaattagatggtttagagcatcat
gatattgcgtttggtgctcttggtggacttatttgtcatttatcccgattgatgttagat
gatgttttacgaaatggagatattctaccataccaagtttataggggatgtctcagaatg
gatggacagacattggtaaatcttgagatcttcaacaacaatgctgatggtggttcatca
ggtacactcttcaaatatctcgatagctgtgtgatgtcatctggtaaacggcttttgaga
agctggatctcccatccgctgaaagatgttgatggcattaataacaggctcaatgtggtt
gaagatctaatggcacattctgaacttatgttggttatttctcaatatttgcgtaaggtt
cctgacatagaacgcttgcttgggcgggttaaggccagtgttcaagcgtcttctcattta
cttcccatgattggcaaaaaagttttgaaacagcgagtgaaagtgtttggactgctcgtg
aaaggacttcgagttgcagttgatttgctggttctgttacagagtgaaggaaagttggta
ttgtcattgtcaaaaaattttaaactccctaagcttgaaggtgatgatgggcttgataaa
ctccttaaccaattcatagcagccgtagatagtgatttctccaattatcagaaccatgat
gtaacagattcagatgctgaaacactttctattctcatcgaattatttatagaaaaagct
gctcaatggtctgaagtcattcatgccatcaattgtattgacgtattaagatctttcgcg
ttcactgccagtacagctttgggggtcatgtccagacctgttatcttacctcagtctaag
acttctttcagcctggggagtctaggacccctacttaaaattaaagggttatggcatcca
tttgcccttggggagaatggaggaatgcccgtctccaatgacttatgccttggtggggat
tcagatggctataatccccgtacgttgctattgactggtccaaatatgggaggaaagtct
acgcttttgcgtgctacttgcatagctgttatactggcacagcttggctgttttgtgccg
tctgagatatgtgtggtttcgcttgtagatatcattttcacacggcttggtgccactgat
cgtatcatgacaggagaaagtacattccttgttgaatgtacagaaacttcgtctattctt
caaaatgccacacaagattctcttgttcttcttgatgaattggggcgaggaacgagcaca
tttgatggatatgcaattgcttatgctgtattccgccaccttgttgagaaggttgactgt
cggttgctctttgcaacacactaccacccacttacaaaagagtttgcttctcatcctcat
gtcattatgcaacacatgtcttgtgcttttaagtcgaaacctgaaggcttgtccaaaggt
gagcaagaactcatttttctataccggcttacaaatggagcctgcccagagagttacgga
ttgcaagtggcactcatggctgggatcccgaaaccggtcgttgaagctgctttgcagggt
ggccagttgatgaaaaaatcaattggtgaaagttttaggtcaagtgaacacaggtcagag
ttctcaactctacatgaaggttggctgaagaccctactaaatgtttccttaggtggagat
tgtaactttgatggagatgatgatgcttatgatacattgttttgcttgtggcatgaagta
aagaacaaatatagacattga
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