Tripterygium wilfordii (thunder duke vine): 119997189
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Entry
119997189 CDS
T07256
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119997189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119997189
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119997189
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_12
TPR_19
TPR_1
ARM_TT21_N
ANAPC3
TPR_MalT
ARM_TT21
DUF627
ARM_TT21_C
Coatomer_E
Motif
Other DBs
NCBI-GeneID:
119997189
NCBI-ProteinID:
XP_038699973
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Position
4:complement(15547859..15555245)
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AA seq
850 aa
AA seq
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MDSRDSSSQLPASNRDVSSSNAGDDDAFFTATAAIAKEAYLHFQARRYVECLEVLNQLLQ
KKPDDPKVIHNIVIAECCRDGCSDPKKLIEALDDVKMRNKRLAQDSEEQLDIRNKLNSLP
KGSGNQYGDGSSASIVYVDEFDTSLATLNMAVVWFHAHEYAKALAVLEPLFQNIEPIDET
TALNVCFLLLDVLLACNDASKSANVLLYLEKTYGVGCLSQSDNGSVGQQQAANLVTKSSS
VPTDASVTDAANSDSASGVNATENPLSRTLSDDTLEYDSMFSLDIGGQNLQRPVGVSPSN
DFSRTPSDRSITNVDVKLKLQLYKVRFLLLTGNLKQAKREVKHAMNIARGRDSSMALFLK
AQLEYSRGNHRKAIKLLMASGNRTETGSMSMFHNNLGCIYYQLGKCHTASILFSKALSNS
SSLRKEKPLKLLTFSQDKSLLITYNCGVQYLVCGKPLLAARCFQKASVMFYNRPLLWLRL
AECCLIAFARGLLNVSQAGLDIKVHVIGKGKWRHLAVENGSTRNGLVDSIEKNNAVLGSD
GQPKLSLPLARQCLFNALHILNASEPPPYGESSLPSSISLEENELSETSFKNSNHKKLPS
TNLKASTLSTSLSQIDANGDSKEQKTSSQDIIQNSLSYHEDVQRRENQMIKQALLANLAY
IELELKNPLKALSTARSLLELAECSKIYIFLGHVYAAEALCMLNKPKEAADHLLVYLSGG
NSFEFPFNHQDLEQLQVERTVDCEELNGVFGSVKSAPQEGTQGSLFLKPDEARGVLSANF
AALSAMQGEFDRARHFVTEALSLMPNNPQATLTAVYLDLTFGKSQEALAKLKECSHVRFL
PSSLQVSKSS
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcgagattcatcttctcaattgcctgcgtcgaatcgagacgtgtcctcctct
aacgccggtgatgatgatgccttctttaccgctactgctgctatcgccaaggaagcctac
ctccacttccaggctcgtcggtatgtcgagtgccttgaggtcttgaatcagctattgcag
aagaagcccgacgatcccaaggttattcataacattgtaattgcagaatgctgtcgtgat
ggttgttctgatccaaaaaagttgattgaagcactcgatgatgtcaagatgagaaacaaa
aggcttgctcaagattctgaagagcagttggatatcagaaataaactcaactccttgcct
aaaggaagtggtaatcaatatggtgatggaagtagtgcaagtattgtttatgtggatgaa
tttgacacttctttggcaacactaaacatggcagttgtttggttccatgctcatgaatat
gcaaaggctttagcagttctggaacctttatttcaaaatattgagcccatagatgagaca
acagctcttaatgtttgcttcctgttgctggatgttttacttgcttgcaatgatgcatca
aaatctgctaatgtgctactgtatctggagaaaacatacggggttggttgtctgagccaa
agtgacaatggaagcgtgggacagcagcaagctgcaaaccttgtcacaaaatcatcttct
gtcccaaccgatgcatccgtgacggatgctgctaattcagattctgcttctggtgtaaat
gccacagagaatcctttatcaagaactttgtcagatgacacactagaatatgattccatg
ttttcgcttgatattggtggacagaacttgcaaagaccagttggtgtttcaccttcaaat
gatttctcaaggacgccatctgataggtctatcacaaatgtagatgtcaagctcaaactg
caactttacaaggttaggtttctgcttctcactgggaacctaaaacaagcaaagcgtgaa
gttaagcatgctatgaacattgcacgtggaagggattcttccatggctctctttttgaag
gctcagcttgaatattctcgtggaaaccaccgcaaagccatcaagctgttgatggcatca
ggcaaccgcacagaaacagggagtatgagcatgtttcacaataatcttggatgcatttat
tatcagcttgggaaatgccatacagcatcaatattgttttccaaggctctgagtaatagc
tcatctcttcggaaagagaagcctctgaagctgttgactttctcacaggataaatcgctc
cttataacttataactgcggtgtgcagtatttggtttgtggaaaacccttactcgctgct
cgttgtttccagaaagcaagtgtaatgttctataatcgacctctcctgtggctccgactc
gctgaatgctgtttgattgcgtttgctaggggattgttaaacgttagtcaggctgggcta
gacatcaaagttcatgttatcggcaagggcaagtggagacatctcgctgtggaaaatgga
agcacgagaaatggactggtagattctattgaaaagaataatgctgttttgggaagtgac
gggcagcccaaactctctctgccacttgcacggcagtgcctttttaatgctttgcacata
ctaaacgcttctgagccaccaccttatggggagtccagtttgccttctagtatctccttg
gaggaaaacgaattgagtgaaacatcgtttaaaaactctaatcacaagaagttaccgagt
accaatttgaaggcgtcaactttatcaacaagcttgagtcagatcgatgcgaatggggat
tcaaaagagcaaaaaacatcaagtcaggatattattcagaattccctttcctatcatgaa
gacgttcaaagaagggaaaatcagatgattaagcaagctcttctggctaatttggcttat
attgagttggaactaaaaaaccctttgaaggccttgtcgacagcgagatctcttctggaa
ctagcggaatgttcaaagatttatatttttctaggtcatgtgtatgcagcagaggccctc
tgcatgttaaacaagccaaaggaagcggctgaccatttgttggtttatttgtctggagga
aacagctttgaatttccattcaaccatcaggacttggagcaactgcaagttgagagaaca
gtagattgtgaagagttgaatggagtatttgggtctgtcaagagtgcccctcaagagggt
acacaaggttctctcttcctcaagccagatgaagcacgtggagtgctttctgcaaatttt
gctgccttgtctgcaatgcaaggtgaatttgatcgagctcgccattttgtgactgaagca
ttgtccctgatgccaaataatccgcaagcaacattgactgcagtttacttggatcttacg
tttggtaagtcacaagaagctcttgccaagttaaaagaatgtagtcatgtcaggtttctt
cccagcagtttacaagtgagtaagtcttcttga
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