Tripterygium wilfordii (thunder duke vine): 119997271
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Entry
119997271 CDS
T07256
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl04120
Ubiquitin mediated proteolysis
twl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
119997271
04120 Ubiquitin mediated proteolysis
119997271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
twl04121
]
119997271
Enzymes [BR:
twl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119997271
Ubiquitin system [BR:
twl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119997271
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
119997271
NCBI-ProteinID:
XP_038700099
LinkDB
All DBs
Position
4:complement(9719208..9726678)
Genome browser
AA seq
531 aa
AA seq
DB search
MMRLRTYAGLSFVATLAVIYHAFSSRGQFYPATVHLSTSKISLVLLLNMGLVVMCILWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVMFLAMVTALLFIKALHWLA
QKRVEYIETTPSVPMLSHVRIVSFIGFLLLVDSLFLYSNIKYLMQTRQASVSLFFSFEYM
ILATTTVSTFIKYVFYVGDMLMDGQWEKKAVYTFYLELIRDLLHLSLYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDASPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGTSTSREQQGSRSDGQQGTSTA
SSGAQVSAVGSSDNLSRHQARLQAAAAAASVYEKSYVYPSANTLVWSPGYAMFPKANNSD
DSTNKESSGDQLSVGQSQQSFRVSGGPVNISLQQFPSFVFVPFQTPSNNLSFEERMSSDP
NMPGSPLEAHKKLLQSQIEVQQVLQNQLKLLEKAKAEESVHIAKGKGVAPS
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcgcacttatgcggggctcagtttcgttgcaactctagcagttatatat
catgccttcagtagtagaggacagttttacccagccacagttcatctatcaacctccaag
attagtttggtgcttctactcaatatgggcctggttgtaatgtgcatcttgtggcaatta
accaaaaaaatatttctgggatctctccgggaagctgaagttgagaggttgaatgagcaa
tcatggagagaggtcatggaaatcctctttgccatcactatctttcggcaggacttttct
gtgatgtttcttgcgatggtcacagctcttttgtttattaaggcattgcattggttggct
cagaagcgggttgagtacattgagacaactccttcagttccaatgctatcgcatgttcgg
attgtttcttttataggctttcttcttcttgtcgatagtctctttttgtacagtaatatc
aagtatttgatgcaaacgaggcaagcttcagtgtcgctcttcttctcatttgagtatatg
atacttgcaacaacaacagtgtcaacattcattaagtatgttttctatgtgggtgacatg
ctgatggatggacaatgggaaaaaaaggctgtctacaccttttacttggaactaatacga
gacttgcttcacttgtctctgtacctctgcttcttccttgtgatttttatgaactatggt
gtgcctttgcacctgataagagagctctatgagacatttaggaatttcaagattcgtgtt
gctgattacattcgctataggaagatcacttcaaatatgaatgatcgatttccagatgct
tctcctgaagagcttaatgcaagtgatgcaacctgcatcatttgccgtgaagagatgact
acagccaagaaattaatttgcgggcatctctttcatgtgcattgcctccggtcatggcta
gaacgacaacatacttgtcctacatgtagagccctagttgtaccatctgaaaatgggact
agcacatcccgggagcaacaaggatccaggtcagatggtcaacaagggacaagcacggca
agttcaggtgcccaggtatcggctgttggttcgtctgataacttgagccggcatcaggcc
agacttcaagctgctgctgcggctgcatcagtatatgaaaaatcttatgtctatccttca
gcaaacacactagtttggtctcctggatatgctatgtttcctaaggctaataattcggat
gattctacaaataaggaatctagtggagatcaactttctgttggacaaagccaacagtcc
tttagagtttctggtggacctgtaaacatatcacttcaacaatttccgtcctttgttttt
gtcccctttcagactcctagtaacaatttatcttttgaagagaggatgagtagcgaccca
aatatgccaggctctccattagaagctcataaaaagttattgcagtcccaaattgaggtc
caacaggtcctgcagaaccaactcaaactcttagagaaggcaaaagctgaggaaagcgtg
cacatagcaaagggaaaaggtgttgccccatcgtaa
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