Tripterygium wilfordii (thunder duke vine): 119997445
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Entry
119997445 CDS
T07256
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119997445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119997445
03041 Spliceosome [BR:
twl03041
]
119997445
03009 Ribosome biogenesis [BR:
twl03009
]
119997445
03016 Transfer RNA biogenesis [BR:
twl03016
]
119997445
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119997445
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119997445
Spliceosome [BR:
twl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119997445
Complex C
U4/U6.U5 tri-SnRNP related factors
119997445
Ribosome biogenesis [BR:
twl03009
]
Eukaryotic type
Pre-60S particles
Helicases
119997445
Transfer RNA biogenesis [BR:
twl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119997445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
119997445
NCBI-ProteinID:
XP_038700398
LinkDB
All DBs
Position
4:complement(13421672..13440042)
Genome browser
AA seq
864 aa
AA seq
DB search
MGPSGTLHSLARWRKATRLSSTRFSGYQWHVWRGMSLFWSQLIPLRGMLFRGSEVLKEAA
WVIFDEIHYMRDRERGVVWEESIIFLPPEIKMVFLSATMSNATEFAEWICHLHKQPCHVV
YTDFRPTPLQHYVFPVGGSGLYLVVDEDEQFREENFVIMRETFLKKVGEGKKSANGTTSG
RIMRNGTAPGGSDIYRIVKMIMERKFQPVIVFSFSRRECEQHAMLMSKLDFNTPEEKDDV
EQVFRNAMLCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALF
ATETFAMGLNMPAKTVVFTKFQKWDGDSHRYIGSGEYIQMSGRAGRRGKDLRGICIMMVD
EQMEMNTLKDMVLGKPAPLLSTFRLSYYSILNLMSRANGQFTAEHVIKNSFHQFQYEKAL
PEIDKKVSKLEEESVMLDASGEAEVAEYHKLKLDLGHLEKKMMSEMTRPERVLYYLRPGR
LVKVREGGTDWGWGVVINVMKKPSGSGSMPSRGSNYIVDTLLHCSSGSRDNSSRPKPCPP
HPGDKGEMHVVPVQLPLISALGKIMISIPSDLRPLEARQSILLAVKELETRFPNGLPKLN
PVKDMNIDDPEIVELVSEIEELERKLQAHPLLKSQDLSQIKCFQRKAEVNNEIQQLKSKM
RDSQLQKFRDELRNRSRVLKKLGHIDADNIVQLKGRAACLIDTGDELLVTELMFNGTFND
LDPHQVAALASCFIPVDKSSEQVHLRTELAKPLQQLQESARKIAVIQHECKLDVNVDEYV
ESTVRPYLMDVIYCWSKGASFAEVIQMTDIFEGSIIRSARRLNEFLNQLHAAANAVGEVN
LESKFAAASESLRRGIMFANSLYL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggaccctctgggaccctgcattcattggcgagatggcgaaaagctacccgtttgagc
tcgacccgtttcagcgggtatcagtggcatgtctggagaggaatgagtctgttttggtct
cagctcatacctctgcgtggaatgctgtttaggggatccgaggttttgaaggaagcggca
tgggttatttttgatgagattcattacatgagggatcgagaaagaggggttgtatgggag
gagagcattatattcttgccaccagagattaagatggtctttttgtcggcaaccatgtcg
aatgccactgagtttgcagagtggatttgtcatttgcacaagcagccatgccatgtggtg
tacactgatttcaggccgactcccttgcagcattatgtatttcctgttgggggcagcggc
ttgtatcttgtggtggatgaggatgagcaatttagggaggaaaattttgttatcatgcgg
gagactttcttgaagaaagttggtgagggcaaaaagagcgcaaatgggaccaccagcggc
agaatcatgagaaatgggactgctcctgggggctctgacatatacagaattgtgaagatg
attatggaacggaaatttcagccagttattgtgttcagctttagcagaagagagtgtgag
caacatgcaatgttgatgtccaaacttgattttaatactccagaggaaaaagatgacgtg
gaacaggtttttcgcaatgctatgctttgcttgaatgaagaagacagaaatttacctgcc
attgagttgatgttgccactacttcagcgaggaattgctgttcatcattctggacttcta
cctgttataaaggaattagtagaacttctctttcaggaaggccttgtcaaggccctattt
gcaacagagacatttgccatgggcttaaacatgcctgcaaaaactgttgtcttcactaaa
tttcagaagtgggatggtgacagtcaccgatacattggatctggtgagtatatacagatg
agtggaagagctgggcggcgtggcaaggatctgcgtggtatttgtattatgatggttgat
gaacagatggagatgaatactctcaaggacatggttttgggtaaaccagctcctcttctc
agtactttcagactcagctactattcaatattaaatttaatgagccgtgccaatggccaa
ttcacagctgaacatgtgataaaaaattcgttccatcaatttcagtatgagaaggcttta
ccagaaatagataaaaaggtgtcaaagctagaagaggaatctgtcatgcttgatgcttca
ggagaagctgaagtagctgaatatcataagctaaaacttgatttgggccatcttgaaaag
aagatgatgtcagaaatgacaaggccagagagagttctttactatcttcgtcccggacgg
ttggtcaaggtaagagaaggaggaacagactggggttggggagttgttattaatgtcatg
aaaaagccctcagggtcaggctcgatgccttcacgtggcagtaactatatagtggatact
ttactgcactgttcgtcggggtcaagggataacagctcacggccaaagccatgcccaccc
catcctggggataagggcgagatgcatgttgtccctgttcagctgcccctgatttctgca
ttaggcaaaatcatgatatctatcccttccgatctccggccgcttgaagcaaggcaaagc
atactgctagcagtaaaggagctggaaactcggtttcctaatggtcttccaaagctcaac
cccgtaaaggacatgaatatagatgatccagaaattgttgagttggttagtgaaattgag
gaattagaaaggaagttgcaagctcatcccctgctcaagtctcaagatctgagtcaaatt
aaatgtttccaaaggaaagcagaggtgaataatgaaattcaacaacttaagtcaaagatg
cgtgattcacagcttcaaaaatttcgtgatgaactcaggaataggtcacgagtcttgaaa
aagcttggccatattgatgctgataatattgtccagttgaagggaagagcagcctgcctg
atagacacgggagatgaactccttgttactgaactgatgttcaatggtacattcaatgac
cttgatcctcaccaagttgcagcacttgcaagttgtttcattccagttgacaaatcaagt
gaacaagttcatttgagaacggaacttgctaaaccactacaacaactccaagagagtgct
agaaaaattgcagtgatacaacatgaatgcaaattagatgtaaatgttgatgaatatgtt
gagtcaacagtgaggccgtacttgatggatgtaatctattgttggtcaaagggggcaagt
tttgcagaggtcattcaaatgactgacatctttgaaggcagtatcattaggagtgctaga
agacttaatgaatttctgaaccagttgcatgctgctgctaatgctgtgggagaagtgaat
ttggagagcaagtttgccgcagctagcgaaagccttcgcagaggtattatgtttgctaat
tccctttatctctga
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