Tripterygium wilfordii (thunder duke vine): 119998186
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Entry
119998186 CDS
T07256
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119998186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119998186
03012 Translation factors [BR:
twl03012
]
119998186
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119998186
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119998186
Translation factors [BR:
twl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119998186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
Rad17
NACHT
BEX
T2SSE
ATPase
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
119998186
NCBI-ProteinID:
XP_038701365
LinkDB
All DBs
Position
5:10811138..10820407
Genome browser
AA seq
1029 aa
AA seq
DB search
MSLCLPGANYCILFLSKHFLVAPRKLYPTRFWISTVAMSSGPNFQGGRRGGGGTRGRVGG
GGRSRGGRGGGGRGEQRWWDPVWRAERLRQKPAVEMEVLDENEWWGKMEQLKSGGEQEMI
IKRNYSHRDQQALSDMAYQLSLYFHAYNKGNTLVVSKVPLPDYRADLDERHGSTQKEIRM
STETERRVGKLLNGSSSEATSIDSSVSSAQGAKQFSVGVKIEKSVSTLEISSAKDSFSAE
LLRRQENFKQSKSAKAMQCFREKLPAFKMKVEFLKAVAENQVLVVSGETGCGKTTQLPQF
ILEDEISCLRGANCNIICTQPRRISAISVAARISSERGESLGETVGYQIRLESKRSMETR
LLFCTTGVLLRQLVQDPNLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS
ATINAELFSKYFGNAPTIHIQGLTFPVVEFFLEDVLEKTRYNIKTEFDNFQGSSRRRRKD
LDSKKDHLTALFEDVDIDSYYNHYSAPTKHSLEAWTGAQLDLGLVESTIEYICRHESGGA
ILVFLTGWDEISKLLDKIKGNSFLGDLNKFSVLPLHGSMPTLNQREIFDRPPPNKRKIVL
ATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPG
FCYRLYPKIIHDAMPEYQLPEILRTPLQELCLRIKSLQLGNVGSFLAKALQPPDSLAVQN
AIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKLLLMGSVFQCLNSALTIAAALAHRD
PFVLPIDRKTEADAAKRSFAGDSCSDHIALVKAFEGYKEAKQTRKERAFCWENYLSPVTL
QLLDDMRHQFLDLLSDIGFVDKSRGPSAYNQYNHDLEMVSAVLCAGLYPNVVQCKRRGKR
TAFYTKEVGKVDIHPASVNAGIHLFPLPYMVYSEKVKTSSIYVRDSTNISDYALLLFGGS
LTPSKTGEGIEMLGGYLHFSASKSVLELIQQLRRELDKLLKRKIDDPGLDISLEGKGVVS
AVVELLHSF
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtgcttgccgggcgctaactactgtatcttattcctttccaaacatttccta
gtcgcgcccagaaaactctatcccactcgattttggatctctaccgttgccatgtctagt
ggtcctaatttccaaggtggtcgccgcggcggaggcgggacccgcggacgagtcggaggt
ggcggccgcagccgtggtggtcgcggtggcggaggacgcggagagcagcgatggtgggac
cctgtttggcgtgcagagcgcttgagacaaaaaccagctgttgagatggaggttcttgat
gagaatgaatggtggggtaagatggagcaactgaagagcggaggggagcaggagatgata
ataaagcgtaattacagccaccgggaccagcaggctttgtctgacatggcttaccaactg
agtctttacttccatgcatataataaagggaatacacttgtcgttagcaaagttccttta
ccagattaccgtgctgatcttgatgaacgtcatggttccactcagaaagagattcgaatg
tccacagaaactgagaggagagttggaaagcttttgaatggctcaagcagtgaagcaaca
agtattgattccagtgtttcatctgctcagggagctaaacaattttcagttggcgtgaaa
atagagaaatctgtctctactttagaaattagttctgccaaggacagctttagtgctgag
cttttgcgtaggcaagaaaattttaagcaaagtaagagtgcaaaggcgatgcaatgcttc
agagaaaagcttcctgcattcaaaatgaaagtagagttcttaaaagctgtagcagaaaat
caggtattggtggtttcaggagagactggttgtggcaaaacaacacagcttcctcagttt
atcctagaagatgagatatcatgtcttcgtggtgctaattgcaacataatatgcactcag
cctcgtcgtatatctgccatatctgttgcagctcgaatatcttcagagaggggggagagt
cttggtgaaactgttggatatcagattcgccttgaatcaaagcgtagcatggaaacacgt
ctccttttctgcaccactggagttttacttcgacagttggttcaggaccctaatctgact
ggcgtcagtcatttgctagtggatgaaattcatgaaagaggcatgaatgaagactttcta
ctaataattttgcgtgaccttcttccacgccgtccagatttacgtcttatactgatgagt
gccaccattaatgctgaattgttttccaagtactttgggaatgcccccactattcacata
cagggattgacctttcctgttgtcgagtttttcctagaggacgttctggagaaaactcgt
tataatattaaaacagagtttgacaactttcagggaagctccagaagaagaaggaaagat
ctagattctaagaaggatcacttgactgcattatttgaggatgttgacattgattcttac
tataatcattatagtgcacctacaaaacattctcttgaagcttggacgggtgcacagctt
gatttgggcctggtagagtctacaattgaatatatctgtcgccatgaaagtggaggagca
atccttgtttttctgactggctgggatgagatttctaagctgcttgacaaaattaaagga
aacagcttccttggagaccttaacaagttttcggtcctgccattacatggttcgatgcct
accctcaaccaacgtgaaatatttgaccgccctccccccaacaagcggaaaattgttctt
gcaacaaatattgcagagagtagtatcaccattgatgatgttgtatatgttatagactgt
ggaaaggcgaaggagactagctatgatgctttaaacaagctagcttgtcttttaccatcg
tggatttcaaaagcttctgcacatcagagacgaggtcgtgctggccgtgtacaacccggt
ttctgttacagactgtatccaaaaattatacacgatgcgatgcctgagtatcaactacct
gaaatactgcgaacacctctgcaagaactatgcctgcgcatcaaaagcttgcagcttgga
aatgttggatcctttttggcaaaggcacttcagccaccggattctctggctgttcaaaat
gcaattgaacttctaaagaccattggggctctagatgatatggaggagcttactcctctt
ggtcgccacctttgtacgttaccccttgatccaaatattgggaaactgctcttaatgggt
tctgtttttcaatgcctgaattctgctctaacaattgctgctgcgctcgcacaccgtgac
ccatttgttcttccaatagacagaaaaacagaagctgatgctgcaaaaagatcttttgct
ggtgattcttgcagtgaccacatagctctagttaaagcgtttgaaggatacaaggaagca
aaacagactcgaaaagaaagagcattttgttgggagaattatctatctccagtaaccttg
cagttactggatgacatgagacatcagtttctggatcttctatctgatattggctttgtg
gacaaatcaaggggtcctagtgcttacaaccaatataaccatgatttggagatggtatct
gcagttctttgtgctggcctttacccaaatgttgtgcaatgcaaaagaagaggaaagcga
acagcgttctatactaaagaagtaggaaaagtggacattcatcctgcgtctgtcaatgca
gggattcatcttttccctttgccttacatggtttatagtgaaaaggtgaaaacaagcagc
atttatgtccgagactcaaccaacatatctgattatgctcttcttctgtttggtggaagt
ctcactcccagcaaaactggggaaggaattgagatgcttggaggttaccttcatttctct
gcatcaaagagtgtactggagttgattcagcaattgcggcgtgaacttgacaagcttctg
aagaggaagattgatgatcctggcttggacatttctttggaaggaaaaggagttgtttct
gctgtggttgaattgttgcacagtttttga
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