Tripterygium wilfordii (thunder duke vine): 119998493
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Entry
119998493 CDS
T07256
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119998493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
119998493
03019 Messenger RNA biogenesis [BR:
twl03019
]
119998493
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119998493
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119998493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
119998493
NCBI-ProteinID:
XP_038701772
LinkDB
All DBs
Position
5:complement(11317729..11325613)
Genome browser
AA seq
1048 aa
AA seq
DB search
MEMESSRRSFDRSRELGVKKPRIEESNPNGHGRPFLQRPVTSASGPTSRYRSADRDSDGN
DSSRGDAYHPRPQQQQYQELVTQYKTALAELTFNSKPIITNLTIIAGENLLAAKAVAATI
CANIIEVPSEQKLPSLYLLDSIVKNIGGDYIKYFAARLPEVFIKAYRNVDPPVHQSMRHL
FGTWKGVFPPQTLQIIEKELDFTPLVNGSSTGAVSRPDSQSQRPPHSIHVNPKYLERQRL
QQSSRAKGMPNDITGAISGTTEGMDKSDRASAVTSRPWADPRIKMQNIQHSRKDAISDSV
REKSISAAYGDFEYGSDLSRAPGLVIGRTDGRVTEQGHDKSLYGSGNSASGTISGQRNGF
NAKHGLPSYSSLKSANIDSHPKQAQSIVSRSSSGLSSSWKNSEEEEFMWEMHSRVADHDI
SSLSTNLRKDHWAPYDSEKLGYESHLRKPHSVHDIGSKFERENSADSLPNEQKEHATYGH
QTLSPWRSPELHSVDGLISSGTRIISSHHSQGHSASFGGLPTNSSSLSRVGDQQQMGSSH
MVASGFGSLETLAQPRFQPIGGASPSGHSPVHQRPSSPPFSARHGRQQLQNIIEQDHQLA
QPAPHPDFRTSQYRGQLAGNQSTKEPSTVFSSDILCSNLQKSQPQDLRGPSPSDQTQRPP
STIGNSAPHSDPLATDTLGQLSTSSLLAEVMKSGIFSNNAITVKTPNRGSLDTVQLLSKS
TIQPPLPRGPTPASATSDISETKVEQPPLSLGPAPSSLSQTSDAVSKTPDPISNLLSSLV
AKGLISSSKTETANTMSSQMPSQLKIVDSITATPISTPITSVPTSLVGSHLSIVDETSVS
EPTGNSSDSLAQSSKIRVENIIGLQFKPDVIREMNPDVINGLFDDLPHCCSSCGLRLKLR
EQLDRHLVWHASLKAPEPSCSSWVSRGWYSNVDDWVYGRVVLPLVSDSAVPVKESEEGTD
RNAAMVPADENQCVCVLCGGMFEDFFCQERNGWMFKGAVYLTRPLGDDEMETAHKRDVNV
VIVHADCMSETSVHDLGLIRDVKMEKDS
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagttcacgtagatcgtttgatagatcgagagagctcggcgtcaaaaaa
cccagaattgaggagtcgaaccctaacggtcatggccggcccttcttgcaaagaccagta
acttctgcttccggaccaacgtctaggtacaggtctgctgatagagactcggatggcaat
gattcgagccgtggagacgcgtaccacccgcggccacagcagcagcaatatcaggagctt
gtgacccagtacaagactgcgcttgcggaactcactttcaattccaaacctataattact
aacctgactattatagcgggcgagaatctccttgcagccaaggccgtcgctgccactatt
tgcgccaatattattgaggttcccagtgagcaaaagctgccatccctgtatcttttggac
agcattgtgaagaatattgggggagattacatcaaatattttgctgccagactacctgag
gtgttcatcaaggcgtacaggaatgttgatcctcctgttcatcaaagtatgcggcattta
tttgggacatggaaaggggtttttcctcctcagacacttcaaataattgagaaagaactt
gactttactcctttagttaatggctcatctacaggagctgtatctagacctgattcacag
tcgcaacgcccaccacatagcattcatgtaaatcccaagtatttggagaggcagcgcctt
cagcagtctagcagggccaaaggaatgcctaatgacatcactggggctatttctggcaca
actgaaggaatggataagtcagacagagcatccgctgttacttctcgcccctgggcggat
cctcggatcaaaatgcagaatatccagcattctcgcaaagatgcaataagtgattctgtt
cgtgagaagagcattagtgctgcatatggggactttgagtatggctctgatctttcaaga
gctccaggtttggtgattggaagaaccgatggtagggttacggaacaggggcatgacaaa
tctttgtatggatctggcaatagtgcttcagggacaatatctggtcaaaggaatggtttc
aatgccaagcatgggttacccagttattcaagtcttaaatctgcaaatattgattcgcat
ccaaaacaagctcaaagcatagtgagtaggtccagcagtggactgtctagtagctggaag
aattctgaggaagaggagttcatgtgggaaatgcactctagggttgcagaccatgacata
tctagtctctccacgaacttgaggaaagatcattgggctccttatgattcagaaaaattg
ggatatgaaagccacctccggaaaccacatagtgtacatgatattgggtcaaaatttgag
agagaaaactcagctgattcactgcctaatgaacagaaagaacatgctacatatggccat
caaacgctctcaccatggagatcaccggagttacactcagtggatgggcttatcagttct
gggactcgtattattagttctcatcattctcaaggccattctgcatcttttggtgggttg
ccgacaaattcaagttctttatccagggtaggagatcagcagcaaatgggttcatctcat
atggtagcctcaggctttgggtctcttgaaaccttagcgcaaccacgatttcagcctatt
ggaggtgcatcaccatctggacactcacccgttcaccagcgtccttcctcgcctccattt
tcagcacgccatggccgtcaacagttgcaaaatatcattgagcaagaccatcaactagcg
cagccagcacctcatcccgacttcagaacttctcagtatagagggcagttggctggtaac
caatccaccaaagagccttccacagtcttctcttctgatattctatgcagtaacctgcaa
aagtcacagcctcaggatttacggggtccatctccttcagatcagactcaaaggccaccc
tcaaccattggaaattctgcaccacattcagatcctcttgctaccgatacattaggacaa
ttgagcacgagtagtttattggcagaagtcatgaaaagtggaattttctcaaacaacgca
attactgttaagacccctaataggggttctttggatactgtacagttgctgtcaaaatca
actattcaacctcctctgccaagagggcctaccccagcatctgctacctcagatatttct
gagacaaaggtggaacagccaccattgtcacttggtccagcaccttcatcattatcacaa
acttctgatgctgtgagtaagacccccgatccaatttcaaatctgttgagctctttagtt
gcaaagggtttgatatcttcatcaaagacagagactgcaaataccatgtcatctcagatg
ccctctcaactgaagattgtggactcaatcactgctacccctatctccactccaattact
tctgttccgacttccttagttggttctcatttgtccattgtggatgaaacttctgtttca
gaacctactggcaatagctctgattccttggctcaatcctccaaaattcgggtagaaaat
atcataggtttacagtttaagccagatgtaattcgagaaatgaatccagatgtgatcaat
gggctattcgatgaccttcctcattgttgcagctcatgtggccttcgacttaaactaaga
gaacaactggatagacatttggtatggcatgcttcacttaaggcacctgagccaagttgt
tcaagttgggtatcaagggggtggtattcaaatgtggacgactgggtttatgggcgggta
gtacttcccttggtttctgattctgcagttcccgtcaaagagtctgaggagggaacagac
aggaatgcagcaatggtgcctgcagatgaaaatcagtgcgtatgtgttttgtgtggtggg
atgtttgaagattttttttgtcaagaaaggaatggatggatgtttaaaggagcagtgtat
ctgactcgtccattgggagatgatgagatggaaacagcacataagagggatgtcaatgtc
gtcattgtgcatgcagactgtatgtcagagacttcggttcatgacttgggactgatcagg
gatgtcaaaatggaaaaagattcataa
DBGET
integrated database retrieval system
