Tripterygium wilfordii (thunder duke vine): 119998503
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Entry
119998503 CDS
T07256
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119998503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
twl03041
]
119998503
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119998503
Spliceosome [BR:
twl03041
]
Complex C
Other components
Step II factors
119998503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_22
IBR_1
HA2_N
AAA_19
zf-C3HC4_2
ResIII
ABC_tran
zf-RING_UBOX
Helicase_RecD
AAA_29
ATPase
Motif
Other DBs
NCBI-GeneID:
119998503
NCBI-ProteinID:
XP_038701784
LinkDB
All DBs
Position
5:706948..716885
Genome browser
AA seq
1750 aa
AA seq
DB search
MKQSTGARRSPSPGYDPRFPPFQSRSVRPSTPPSFYPHQLYHQNRPQNQNNRYGQQFRSV
APNVCPECVVQLRASTGESSRSVKKDVDALFSQCQSDHVRVVFSSSGSGSATLYFQQWAE
ALSSLTKFWELRLSGDHDLAPRLVSRAIDPDELKNRLRALFVEHVKGIMDGEIVKRCQAK
IQLKSDEIAGVSAQLKERNKIWICNDLVQKRKGLSAERDLMGKRVKEFKEAMRCLLYYLG
EEDCAGVDMGSVKGVRVLKLKGEYDWERIYQLTARECRRLEDGLPIYAYRQQILYRIYEK
QTLVLIGETGSGKSTQLVQFLVDSGVAAEESIVCTQPRKIAATSLTQRVREESSGCYKDN
SVMCYPTFSSTQQFDSKVIYMTDHCLLQHYMNNRDLSGISCIIIDEAHERSLNTDLVMAL
VRDLLFHKPNLRLVIMSATANANQLANYFFGCEIFYVVGRNFPVDVRYVPCAIEESSSSK
IVSSYVVDVVNMAKEIHKTEKEGTILAFLTSQAEVEWACEKFEAPSAVALPLHGKLSSEE
QFQVFQKFRGKRKVIFATNLAETSITIPGVKYVIDSGMVKESKFDPNTGMNTLRVCWISQ
SSAEQRAGRAGRTEPGRCYRLYRKCDFESMPSNQEPEIRRVHLGVAVLRIMALGIKNVQE
FDFVDAPSTKAIDMAIKNLVQLGAIALNNGVFELTEDGRYMVKLGIEPRLGRLILSCAWH
RLAKEGLILAAVMANSSSIFCRVGNDEDKLRADGLKVQFCHPSGDLFTLLSVYKEWEAVA
PERRNIWCWDNSINAKSMRRCQDTAKELEYCLERELDFIVPTYWRWNPNKSSEHDECLKK
VILSALAENVAFYSGSDQLGYEVALNGQHVHLHPSCSLRIFGQKPTWVVFGEVLSTSGQY
LVCVTAFDFEYFSTLHPPPLFDVCKMEGRKLEVKVLTGFGATLLKKFCGKSNNNLLSLRS
RIRAACMDERICIEINFDQNEIQLFASKESMEKVTVIVVEVLECEKRWLSNECMEKYLYD
GHGFSPVALFGAGGEIKHLELGKSALTVDVFHPSANMIDEKVLLLFFEKHTSGRVCSVHK
TSGIGQEGDEKEKWGRITFLSPDTAGKATELNGVEFSGSTLKVLPAPTSSGGNHRMAAFP
AIKAKIYWPRKRSKGFGVLKCHLNDIGYMLDDFANVVMGGNYVRCEVSKRNDDCVVIYGI
DKELSEADILGVLRTATHRRILGFFLVRGDAVENPLHSTCEEALMREISSFMPKRNLYSS
CCRVQVFPPEPKDAFMKALMVFDGRLHLEAAKALEHLEGKVLPGCHSWQKLKCQQLFYSS
ISCPAYVYSVIKKQLDTVLASFNYVKGAEYFLEKTESGSYRVRISANATRTVAELRRPLE
ELMRGKIINDASLSPSLIQHLFSRDGFNLMKLLQRETGTCILFDRRSLNVRVFGSSQNVA
KAEEKLIQSLLTHHESKQLEIRLRGGNLPPDLMKEVVKRFGPDLRGLEQKVPGVELTLNV
YRQVISFHGERELRPKVEEIIHEIAQSSVGSDRSLDGENACPICLCEVEDGHRLEGCGHS
ACRQCLLDQLDSALKNLDSFPICCACEDCNIPILLTDLKSLLSSEKLEELFRASLGAFVA
TSGGAYRFCPSPDCTSVYQVAEPGMGSVPFVCGACYAETCTRCHLECHPSVSCELYREFK
EDPDSSLKEWCRGKNNVKSCPVCGYTIEKTEGCNHVECLCGRHICWVCLDYYHSSEDCYG
HLRSVHMTFI
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatcaaccggcgcccgccggtcaccgtcgccgggttatgatcctcgctttccg
ccgtttcagtcccgttccgttcgtccctcaacaccaccatcgttctatcctcaccaactt
taccaccaaaaccgacctcaaaaccagaataaccgctacggtcaacagttccgttcggtg
gcccccaacgtctgcccggagtgcgtcgtccaacttcgtgccagtacgggcgaatcgagc
aggtccgtaaagaaggacgtagacgcgctcttttcacaatgccagtccgaccatgtgaga
gttgttttttcctcctctggctctggttccgccacgctttatttccagcagtgggccgag
gcactctcttcattgaccaaattctgggagctccgactgagcggtgaccatgaccttgcc
ccaaggcttgtgtcaagggcgattgaccccgatgagctaaaaaataggctcagagcctta
tttgttgagcatgttaagggcataatggatggagagatagttaagaggtgtcaagcgaaa
attcagctgaaatcggatgagatagctggggtttccgctcagctcaaggaaagaaacaaa
atttggatatgcaatgatttggttcaaaagaggaagggtttatctgcagagagggactta
atggggaagagagtgaaggagtttaaggaagctatgaggtgtttgttgtattatcttgga
gaagaggactgtgcgggtgttgacatgggcagcgttaaaggtgtgcgggtgctcaagtta
aaaggggaatatgattgggagcggatttatcagttaactgcaagagagtgtaggaggctg
gaggatggtttaccaatttatgcttaccggcagcaaattctctataggatctatgaaaaa
cagacactggtattgattggagaaactggttcaggaaagagtacgcaattagttcaattc
ctcgttgactcgggtgtagctgctgaggagtccattgtctgcactcagccccgcaaaatt
gcagccacctcactgacacaaagggtcagagaagaaagcagtggatgttacaaggataat
tcagtgatgtgttatccaaccttttcatctactcagcagtttgactccaaggtaatttat
atgacagaccactgcttgttgcagcactacatgaataatagagacttatctgggatttca
tgcataattattgatgaggcacatgaaagaagcttgaacactgatctggtaatggcattg
gttagggatttacttttccataaacccaatctaagacttgtaataatgtctgcaacagct
aatgcaaaccagctagcaaactacttttttggttgtgaaattttttacgtggttgggaga
aactttccggtggatgttagatatgtcccttgtgccatcgaggaatcttcttcttcaaag
attgtttcttcatatgttgttgatgttgtgaacatggctaaagagatccacaaaactgag
aaagaagggactattctggcctttttgacttctcaagcagaagttgaatgggcttgtgaa
aaatttgaagccccctctgcagttgcgttaccgttgcatgggaaactttcttctgaagag
caattccaagttttccagaaattccgtgggaaaaggaaagttatttttgctactaatctt
gctgagacttccattacgattccgggggtcaaatatgtaattgattctggcatggttaaa
gaaagcaagtttgaccctaacactggcatgaatactctaagagtttgctggatcagtcag
agttctgctgaacaaagagctggtcgtgctgggaggacagaacctgggagatgttatagg
ctgtatagaaagtgtgattttgagtcaatgccatccaatcaggaacctgaaattcgccgt
gttcatcttggtgttgctgttctgagaatcatggccttgggtattaagaatgtacaggaa
tttgattttgttgatgcgcctagtaccaaagccattgatatggcaattaagaatcttgtt
cagttgggagccattgcactgaacaatggtgtctttgaattaacagaggacggccgatac
atggttaaattgggcattgagcctcgtcttggtagattaatacttagttgtgcttggcat
cgcttggctaaagaaggtctcattcttgctgctgtcatggcaaattccagtagtatattc
tgtagagttggtaatgacgaggataagctaagagcggatggacttaaggtgcaattttgc
catccaagtggtgaccttttcactctgctttctgtatataaggaatgggaggctgtggcg
ccagaaagaagaaatatttggtgttgggataacagcattaatgcaaagtccatgcggagg
tgccaagacaccgctaaagaactggaatattgccttgagagagaacttgattttattgtt
ccgacatactggcgttggaatcctaacaagtcttctgagcatgatgagtgcttaaaaaag
gttatactctccgcccttgcagaaaatgtagctttctattctggatctgatcaacttggt
tatgaagtggcattgaatggacaacatgtgcatctccatccttcatgttccttgcgaatt
tttggtcagaagccaacttgggttgtatttggtgaagtcttatcaacatccggtcaatat
ttggtctgtgtaactgcttttgactttgaatatttctcaaccctgcaccctcctccactg
ttcgatgtctgtaagatggaagggcggaagttggaagtaaaggtattgactggttttggt
gctaccctcctaaaaaagttctgtggcaagtcgaacaataacctgctttctctcaggtct
cgtattcgggctgcctgtatggatgaacgaatttgtattgaaatcaattttgatcagaat
gaaatccagttatttgcctccaaagaaagcatggagaaggttactgttattgtggttgag
gtcttggaatgtgagaagaggtggttgagtaatgaatgcatggagaaatatttatatgat
gggcatggtttttctcctgtggctctctttggagctgggggtgagatcaagcacttggag
cttgggaagagtgctttgactgttgatgtatttcatccaagtgcaaatatgattgatgaa
aaagtgcttttacttttctttgagaaacatacatccggtagagtttgttctgtccacaag
acctcaggcattggacaggagggtgacgaaaaggaaaagtggggtaggataacttttttg
tctcctgatactgctggaaaagccactgagctgaatggagttgagtttagtggctccaca
cttaaggtacttccagccccaacaagttctggaggtaaccatagaatggctgcattccct
gctattaaagcaaaaatatattggcctcgtaagcgcagtaagggatttggagttcttaaa
tgtcacttgaatgacatcggttatatgcttgatgattttgctaacgtagtgatgggaggc
aactatgttcggtgtgaagttagcaagagaaatgatgactgtgttgtaatttatggaatt
gataaagaactttctgaagctgacatcttaggtgtattgaggactgctactcataggcga
atcctgggtttttttctagtgagaggggatgctgtagaaaatccactgcacagcacatgt
gaggaagctctcatgagagaaatatcctctttcatgcctaaaaggaatctctattctagc
tgttgcagagttcaggtctttcctcctgaaccaaaggatgcttttatgaaagcattgatg
gtctttgatggaagattgcatttagaggcagcaaaagctttggagcacttggaagggaag
gtattgcctgggtgtcattcttggcagaaactgaagtgccaacagttgttttacagctct
atatcttgtcctgcatatgtgtattctgtaatcaagaagcaactggacacagtacttgca
agcttcaactatgtaaaaggtgcagaatacttcctggagaagaccgaaagtggttcatac
cgagtgagaatatcagctaatgctacaagaactgtggcagagctaagacggcctttggaa
gagcttatgagggggaagatcatcaatgatgctagccttagtccttcccttatacagcat
ttgttctcccgagatggtttcaatcttatgaaactgttgcagcgtgagactggaacctgc
attttgtttgacagacgtagccttaatgtacgggtctttggttcttcacagaatgtagcc
aaagccgaagagaaattgattcaatcccttcttacacaccatgaaagcaagcaacttgaa
atccgtctccgaggtggaaatctgcctcctgacctgatgaaagaagtggttaagaggttt
ggtccagacctccgtggacttgaacagaaggtaccgggggttgagttaacccttaacgtc
taccgccaagtcatctcctttcatggtgagagagagctgaggcctaaagtggaagaaata
atacatgagattgcacagtccagtgttggttcggataggagccttgatggtgaaaatgct
tgccccatatgcttatgcgaagttgaggatggtcacaggcttgaaggttgtggccattca
gcatgccgacagtgcttgttggaccagttagattctgccctcaaaaacttggatagtttc
cccatatgctgtgcctgtgaggactgtaatattcctattttgctaacagatttgaagtct
ctcttgtcaagtgagaagttggaggaacttttcagagcttctttgggggcatttgtggca
acaagcggaggtgcttacaggttttgcccatcgcccgactgcacctcagtttatcaagtg
gcggaacctggaatgggtagtgtgccgttcgtttgtggggcatgttatgcagagacctgt
actaggtgtcacttggagtgtcatccatctgtgtcgtgtgaactgtaccgggagttcaag
gaagatcccgattcgtcgctgaaggagtggtgcaggggaaaaaacaatgtcaagagctgt
cctgtttgtgggtatacaattgagaaaacagaagggtgcaaccacgtagagtgtttatgt
gggaggcacatttgctgggtctgtctagattattatcatagcagtgaggactgctatggc
catttgagatccgtgcatatgacttttatataa
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integrated database retrieval system
