Tripterygium wilfordii (thunder duke vine): 119998538
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Entry
119998538 CDS
T07256
Name
(RefSeq) vacuolar sorting protein 39
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl04142
Lysosome biogenesis
twl04145
Phagocytosis
twl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
119998538
04142 Lysosome biogenesis
119998538
04148 Efferocytosis
119998538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
twl04131
]
119998538
Membrane trafficking [BR:
twl04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
119998538
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
PPR
zf-HC5HC2H
zf-HC5HC2H_2
TPR_WDR35
DUF2175
AlaDh_PNT_N
RESC9_N
Motif
Other DBs
NCBI-GeneID:
119998538
NCBI-ProteinID:
XP_038701818
LinkDB
All DBs
Position
1:10111461..10118858
Genome browser
AA seq
1007 aa
AA seq
DB search
MVHSAYDSFELLCDCPTKIDAIESYGSRLLLGCSDGSLRIYSSEASGSDRSPTPDYHDKD
LELRKEPYALERNIPGFSKKPLVSMEVVESRELLLSLSESIAFHRLPNLETIAVITKAKG
ANVYSWDDRRGFLSFARQKRVCIFRHDGGRGFVEVKDFGVPDLVKSMSWCGENICLGISK
KYMILNATNGALTEVFPSGRLAPPLVISLPSGELLLGKENIGVFVDQNGKLLQAERICWS
EAPTTVVILKPYAIALMPRRVEIRSLRVPYPLIQTVVLQNVRHLTRSNNVLIVALDNSVY
GLFPVPLGAQIVQQTASGNFEEALALCKMLPPEDASLRAAKEGSIHIRYAHHLFDNGCYE
EAMEHFLASQVDMTYVLSLYPSIILPKTAIIPEPEKVMDISWDGPYLSRGSSALSDDMEF
SPPRQLSESDENAALESKKMSHNSLMALIKFLQKKRYSIIEKATVEGTEEVLGAVGDNFA
SYDSSRFKRSNKGRGSTPINSGAREMAAILDTALLQALLLTGQFFAALELLKGVNYCDVR
ICEEILQKNNHYTALLELYKWNSMHREALKLLHELVEDSRSDQLQAGVTKKFNAESIIEY
LKPLCATDPILVLEFSMLVLERCPTQTIELFLSGNIPSDLVNSYLKQHAPSMQGRYLELM
LAMNENGISGNLQNEMVQIFLSEVLDWHADLTAEQKWDEKAYSPTRKKLISALENISGYN
PEALLKRLPVDALYEERAVLLRKMNQHELALSLYVHKLHVPELALSYCDRVYESTLHQSS
GKPSGNIYLTLLQIYLNPRRTTKNFEKRITKIVSSQNTNTLKVGSGTSVKAKGSRGAKKI
AAIEGAEDVKVSLSSTDSSRSDGDAEELNEEGGSTIMLDQVLDLLGQRWDRINGAQALKL
LPRETKLQNLLPFLGPLLKKSSEAYRNFSVIKSLRQSENLQVKDELYNQRKTVVKITSDT
TCSLCNKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVAKGSPLRKR
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggtacacagtgcctacgattcatttgagctcctctgcgactgccccacaaaaatcgat
gctatcgaatcgtatggttccaggcttcttctcggctgctccgatggatccctccgtatt
tatagctcggaagcctccggctctgaccgatctccaacgcccgattaccacgacaaagac
ctcgagcttcggaaggaaccgtatgcactggagaggaacattccgggattctccaagaag
cctctggtgtcaatggaggtagtggagtcgagggagctgcttctgtcgctctccgaatca
atcgcgttccacagactccccaatttggagaccattgctgtgatcaccaaggccaaaggc
gccaatgtgtactcatgggatgatcgcagaggtttcctttcctttgcgaggcaaaagcgg
gtttgtatcttcaggcatgacggaggaagaggatttgtggaggtcaaagattttggggtc
ccagatttagtgaagtccatgtcctggtgtggtgagaatatatgtctggggattagcaaa
aagtacatgatactaaatgctaccaatggtgcattgactgaggtatttccatctgggagg
ctggccccgcctttagtcatctctcttccctctggagaacttctgcttgggaaggagaat
attggtgtttttgttgatcaaaatgggaaacttcttcaagcagagaggatttgttggtca
gaggctccaacaactgttgtcattctgaagccttatgcaatagctctgatgccaagacgt
gttgagattcgctctctacgagttccgtatccattgatacagactgttgttcttcaaaat
gttcgccatctcacccgaagcaacaatgtgctaattgttgcactagacaattcagtttat
gggctttttcctgttcctcttggtgcacagattgtacagcaaacagcatctggaaatttt
gaggaagccttggcattgtgtaagatgcttccaccagaagatgctagtcttcgagctgcg
aaggagggctcaattcacataagatatgctcatcacctttttgataatggatgctatgag
gaagctatggaacattttttggcatctcaagtggatatgacatatgtgctttctttatat
ccatctatcatactacccaaaacagctataattcctgaaccagagaaggtcatggacata
tcttgggatggtccatatctttcaagaggttcatctgctttgtcagatgatatggaattc
tcacctccacgacagctatcagagtctgatgagaatgcagcccttgagtccaagaaaatg
agccacaattcacttatggctctcataaagttcttgcagaagaagagatacagtataata
gaaaaggcgactgttgaggggacagaagaagttttgggtgcagttggagataattttgca
tcatatgactcctctaggttcaagagatcaaacaaggggcgtggtagcactcccataaat
tcaggcgctagagagatggcagctatactggatacagcattactgcaagctctacttctc
actggacagttctttgcagccttagaattactgaaaggtgtaaactactgtgatgtaaga
atatgcgaggagattcttcagaaaaacaatcactacactgctttgttggaactttataag
tggaattctatgcaccgtgaagcccttaaacttctgcatgaattagtggaagactcgagg
tcagatcaattgcaagctggggtcaccaagaagttcaatgcagagtcaattattgaatat
ctcaagcctctctgtgcaacagatcccatacttgtcctggagttctcaatgcttgttctc
gaaaggtgtcctacgcaaactattgagctctttctatctggaaacatcccatcggacttg
gtgaactcttacttgaagcagcatgctccgagcatgcaggggaggtatttagagctaatg
cttgcaatgaatgaaaatgggatttcaggaaacctacaaaatgaaatggtacaaattttt
ctctcggaggtacttgactggcatgctgacttaactgctgaacagaaatgggatgaaaag
gcttattcacccacaaggaagaaactaatatctgctttagagaatatctcaggatacaat
ccggaagctttgcttaaacgtcttccagtggacgctttatatgaagagcgtgcagttctg
ttgaggaaaatgaaccaacatgaacttgccttatctttgtatgttcataagcttcatgtt
cctgaactggcattgtcctattgtgaccgagtatatgaatctacacttcatcaatcatct
ggaaagccttctggcaacatatacctcactcttctgcaaatatatttgaatcctcggaga
acaaccaagaattttgaaaagcgaattacaaagatagtatcatctcagaacacaaacact
ctaaaggttggttcgggaacttcggttaaagccaaaggaagtcgtggagccaagaaaatt
gctgcaatagagggtgcagaagatgtgaaggtcagccttagtagcacagacagcagcagg
agtgatggtgatgcagaagaattaaatgaggaaggaggttctacaataatgcttgatcag
gtccttgatctattgggccagagatgggatagaatcaatggagctcaggccctcaagctc
ttaccaagagaaactaaactacagaacttgctgccatttcttgggccgcttctaaaaaaa
tcgagtgaagcatacaggaacttttcagtgatcaagagtttgaggcagagtgagaacctg
caggtgaaagatgaactctacaaccagaggaaaacggtagtaaagatcactagtgatact
acgtgttctctctgcaacaaaaagattggcacaagtgtttttgcagtttaccccaatggg
aagacgattgtccacttcgtttgcttcagagattcgcagagtatgaaagctgtggctaaa
ggatcaccgttaaggaagcgttga
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