Tripterygium wilfordii (thunder duke vine): 119998730
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Entry
119998730 CDS
T07256
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119998730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
119998730
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
119998730
mRNA cycle factors
Common to processing body (P body) and stress granule
119998730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
119998730
NCBI-ProteinID:
XP_038702043
LinkDB
All DBs
Position
5:complement(12090669..12096331)
Genome browser
AA seq
1024 aa
AA seq
DB search
MTVPMNNSLDLSSRERVQSLFHKNVELENSCKKAAQARIPSDPNAWQQIRENYEAIILED
HVFAEQHEVEYALWQLHYRRIEELRAHLNAALASSHSPLPQDVEVSSRPERVTKIRSQFK
AFLSEATGFYHDLMLKIRTKYGLPLGLFFDGPESQNVVSRDGNKSIEMKKCMISCHHCLI
YLGDLSRYKGLYGEGESKTRDFAAASSYYMEAFSLCPSSGNPHHQLAILASYSGDELVAV
YRYFRSLAVDNPFSTARDNLIIAFEKNRQSFSQVLESAEASSAKNALARMNRRGRGRGVA
TSVKDDKMGASPVKENPSSTHEILKSFSTCFIRLNGILFTRTSLEMFVEVLSVVRGDLFK
LLSSGTEEKYNFGSRPSDNGLMIVRLVAILIFTVYNAIRETEYQSYAANLQCSVLRQNAC
TAIFEVMGIIVERCIQLQDPLTSFLLPGVLIFMEWLACQPDIAAGSEVEENQATARSFFW
KSCVSLLNKLLTSGLMSINEDKDETCFSNMSTYNEGETANRLALWEDFELRGFVPLVPAQ
LILDFSRKQSSENDGGDREIRARLQRIVAAGKSLASVVQVGKQGMYFDSRVKRFAIGIEP
QSGKESDFELSSSNEMSACDGVMKIEHIGEQKLSPEDSQLNSQLYTEMEEEDEVIVFKPY
MTDKRVDFDGSKLSSAEVFGHGGGISSQEDLGSCVALVSASQDGFEVLNDLSSKAPISTV
TIPQRVPSLNSFHTRSSISLAAAQDVPLLNTIDTSSRPPASLANLSQHVQPIQPSASKWL
LESENSIANGFSELNLTENGLVTKPRLQKSFGCLQPATFPFPCPHAVNHSSGKVHPIQVS
DTVIPSKLDSVMPLGANFNSLTSSALPASKTKYPVSRPTRHVGPPPGFVPPKFADESFFD
IGLNDNLTVDDYSWLDGYELPSSTKGSGYTNSSSLSAQSYHHVPVGSSPTGVVTSFPFPG
KQFPSLQAQSENHISVQDYQVLDHLKLYQEQQMQQQLLKKVNHQSGHLPEQYWGQLPREG
HFFV
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccaatgaataattccttggatctttcatctagggagcgcgttcaaagtctt
ttccacaagaatgttgagttggagaatagctgcaaaaaggctgcacaggccaggattccc
tctgatcctaatgcctggcaacaaattcgtgaaaactatgaagccattatccttgaagat
catgtctttgctgaacaacatgaagtagaatatgctttgtggcagttgcattaccggcga
attgaggagcttcgagcacacctcaatgctgctcttgcttcatctcattcacccttgcct
caggatgtggaagtatctagtcgacctgaacgagttactaaaattcgttcacaatttaaa
gcctttctttctgaagcaactggcttttatcatgatctgatgttgaaaattagaaccaag
tatggtctacctcttggtttattctttgatggtcctgagagtcagaatgttgtgtctaga
gatgggaataaatccatcgagatgaagaaatgcatgatttcctgccatcattgtctgatt
tacctgggtgacctttcgcgttataaaggtttatatggggaaggtgagtctaaaaccaga
gattttgctgcagcatcaagttattatatggaagccttttccctttgtccttcaagtggg
aatcctcatcatcagcttgcaatactggcttcctattcaggggacgaattggtggcagta
taccgctactttaggagtttggcagttgataaccctttttcaacggcaagggacaactta
attattgcatttgagaagaatcgccagagtttctcacaggttcttgagagtgcagaagct
tcatcagctaagaatgcactggcaagaatgaatagaagaggaagaggaagaggtgtggcg
acttcagtgaaagatgataaaatgggagcaagtcctgtcaaggaaaatccatctagtacg
catgaaattcttaaatccttcagcacttgttttattcgactaaatgggattctgtttact
cgcacaagcttggagatgttcgtagaggttttgtctgtggtgagaggagatctgtttaaa
cttctctcatctgggactgaagaaaagtataattttggttctaggccttcagataatggt
cttatgattgttaggcttgtagccattcttattttcacagtttacaatgcgattcgggaa
actgagtatcagtcatatgctgcgaacttacaatgctcagttctgcgtcaaaatgcctgt
actgccatttttgaggttatggggatcattgttgagagatgcatacaattacaggatcct
ttaacaagctttcttttgcctggtgtgctgatttttatggagtggttggcttgccaacca
gatattgcagccggcagtgaagttgaggaaaatcaggccactgctagatcattcttctgg
aagagttgtgtctctcttttgaataagcttctgacaagtgggctcatgtcaattaatgag
gataaggatgagacttgtttttccaacatgagcacctataatgaaggtgaaaccgcaaat
cggcttgcactatgggaggactttgaattgagaggatttgtgcctcttgttccagcacaa
ctaattcttgacttttcaaggaagcagtcttctgaaaatgatggtggagatagggagata
agagctcgacttcagaggattgtagcggctgggaagtcacttgccagtgtggttcaggtt
ggtaagcagggcatgtattttgattcaagagtaaagagatttgcaattggcattgagccg
caatctggaaaggagtctgattttgagctttctagttctaatgaaatgtccgcatgtgat
ggggtgatgaagattgaacatattggtgagcagaaattgagtccagaagattcacagctg
aattcacagttatatacagaaatggaagaggaagacgaggtcattgtttttaagccttat
atgacagataagcgtgttgattttgatggctccaagctgtcttctgctgaggtctttggg
catggtggtggtatttcttcgcaggaagatttgggaagctgtgttgcattggtgtcagcc
tcacaagatggttttgaagtgctgaatgatttaagctcaaaggcacccatatctactgtg
accattccccagcgtgtgccatcactgaatagtttccacacaaggtcctctatatctctt
gctgctgctcaggatgttccattgctaaatactattgatacaagctcgaggcctccagcg
tctctcgctaacctctcccagcatgtgcagccaatccaaccaagtgcttcgaagtggctg
ctggaatctgaaaattctattgccaatgggtttagtgagttgaatttaacggagaatggg
cttgttacaaaacctcgattgcaaaaaagctttggatgtttgcagcctgcaacattccca
ttcccgtgtccacacgctgtgaatcacagttctggaaaggtgcatcccattcaggtttct
gatactgttataccttctaaattagattcagtcatgcctcttggagccaactttaatagt
cttacgtcttcggctttgccagcaagtaaaacaaaatacccagttagccgaccaacacga
catgttggtcctccacctggatttgttcccccaaaatttgcagatgagtccttctttgac
attggtttgaatgataatttaacagtggatgattatagttggctagatggatatgagctc
ccatcatccacaaaaggcagtgggtataccaattccagcagtctttcggctcaatcctac
catcatgtgcctgtgggcagtagtccgactggggtggtaacaagcttcccatttcctgga
aaacagtttccatctttgcaagctcaatcagaaaatcatataagtgttcaggactatcag
gttcttgatcatctgaaactttaccaggagcaacagatgcaacagcagttacttaagaaa
gtaaatcaccaatctggtcatctgccagagcagtattggggacagcttcctcgggaaggt
catttctttgtgtga
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