Tripterygium wilfordii (thunder duke vine): 119999665
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Entry
119999665 CDS
T07256
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119999665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
twl03041
]
119999665
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119999665
Spliceosome [BR:
twl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119999665
Complex B
119999665
Complex C
U2 SnRNP specific factors
119999665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119999665
NCBI-ProteinID:
XP_038703292
LinkDB
All DBs
Position
6:577157..582275
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AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERSQAPQRLYVPPSSRGRGHDNYEDNDIDSIEYDDTELT
VDNSAPENGGVENDEIDPLDAFMEGIHEEVRAAPPPKPKEKIEKYIDDEEDDPVESFLRA
KKDLGLTLAADALQAGYDSDEEVYAAAKAVDAGMVEYDSDDNPVIKDKKNIEPIPALDHS
TVDYEPFNKDFYEENPSISGMSEQEVAEYRKMLAARVSGFDVPRPLKTFKDCGFSPQLMH
DISKQGYEQPTPIQCQSLPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELKKEEG
PIGVICAPTRELAHQIYLETKKFAKAHGIRVSALYGGMSKLDQFKELKAGCEIVVATPGR
LIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVE
KLAREILADPVRVTVGEVGMANEDITQVVHVIPSDVEKMPWLLEKLPGMIDDGDVLVFAS
KKATVDEIESQLAQRGFKVAALHGDKDQASRMEILQKFKSGVYHILIATDVAARGLDIKS
IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGIAYTLVTQKEARFAGELVNSLIAAGQNVS
TELMDLAMKDGRFRSKRDGRKGGGKKGKGRGGGGGNRGVRGVDFGLGIGYNPESSSTPSH
PVQSRSAAVNSLKTGVMAQFKSKFVAASSNSQGQGLSNSSNTYANNRPSLPGFVSGGTIG
GDAKRTLTTSSFNSPISKVPNSGGQSSGENESRKPADSSRERGRERRRSSGWDR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgaaggatttgggataaaccgccaaacgacctacaac
ttcgagcgatcccaagctccccagcgactgtacgtgcctccgtcttcgcgcggccgtggt
catgacaactacgaagataacgacatcgacagcatcgagtatgatgataccgaactcact
gtcgacaatagtgcgccagaaaacggtggcgttgagaatgacgagattgaccctctcgac
gcattcatggaaggcattcacgaggaagtgagggcagcaccgcccccgaaacctaaagaa
aagattgagaagtacatagatgacgaagaggacgatccggtggagagctttttgagggca
aagaaggacttggggctcacactggccgcggacgcgctgcaggctggttatgattcagac
gaggaggtttacgctgctgcaaaggctgtggacgctgggatggtggagtatgattcagat
gataatccagtgatcaaggacaagaagaatattgagccaattccggctctggatcatagt
actgttgactatgagcctttcaacaaggatttttacgaagagaatccgtcaatatctgga
atgagtgagcaggaggttgctgaatacaggaagatgttggctgctcgcgtttctggtttt
gatgttcctaggccacttaagacattcaaagattgtggtttttctcctcaattaatgcac
gatatatcaaaacaagggtatgagcagccgaccccaatacaatgccaatctttaccaatt
gtactttctggaagagatataatcggaatagcgaaaactgggtctggtaaaactgctgca
tttgtgcttcccatgattgtgcatattatggatcagcctgaacttaagaaagaagagggc
ccgattggagtaatatgtgcacctactagagagttagctcatcaaatatacttggagact
aaaaagtttgcgaaagcacatggaatacgtgtctctgctctctatggtggaatgtcgaaa
cttgatcagttcaaagaactcaaggcaggatgtgaaatagttgtagcaactccggggagg
ttgatagacatgctaaagatgaaggcacttacaatgttaagagcaacttacttggtactt
gatgaggctgatcgtatgtttgacctaggatttgagccacaagtaaggtcaattgttggt
cagattagaccagatcgtcagacattgctgttttcagcaacgatgcctcgcaaagttgag
aaattagctagggagattctcgctgatcctgtaagagttacagtgggggaggtagggatg
gccaatgaggatattactcaggttgttcatgttattccatctgatgtagaaaagatgccc
tggcttcttgagaagctacctggaatgattgatgatggtgacgttttagtttttgcttcc
aaaaaggcaactgtagatgagattgagtctcaactggctcagagggggtttaaagttgct
gctctccatggtgataaagatcaggcttctcgaatggagatattgcaaaagtttaaatct
ggtgtctaccacattcttattgcaactgatgttgctgctcgtggtcttgacatcaagtcg
attaagtcagtagtgaactttgatattgcaagagacatggacatgcatgttcatcgtatt
ggtagaacaggtcgggctggtgacaaggacgggattgcatatactcttgtaactcaaaaa
gaggcacggtttgctggtgaattggtaaatagccttattgctgccggccagaatgtgtcc
actgagctgatggatctcgccatgaaggatgggagattcaggtccaaacgtgatggaagg
aaaggaggagggaaaaagggcaaggggaggggtggaggtggcggtaatcgaggtgttcgt
ggagtggattttgggctgggtattggctataatccagaatctagtagcactccatcacat
cccgttcaaagtcgatcagccgctgttaattcactgaagacaggagtgatggcacaattc
aagagcaaatttgttgctgcttcatcaaactcacaaggtcaggggttgagcaatagctcg
aatacctatgccaacaatagaccatctttgcccggatttgtgtctgggggtactattgga
ggggatgcaaaaagaactttgacaactagttcattcaattctcctatttcaaaagtacct
aatagtggtggtcagagctctggagaaaatgaaagtcggaaacctgcagacagttccagg
gaaaggggaagagaaaggcggaggtcttctggttgggaccgataa
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