Tripterygium wilfordii (thunder duke vine): 119999715
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Entry
119999715 CDS
T07256
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
twl03009
]
119999715
Ribosome biogenesis [BR:
twl03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
119999715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_SCAP
WDR54
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Beta-prop_BBS7
PEP5_VPS11_N
Beta-prop_Nup120_160
Beta-prop_LRRK2
Beta-prop_NUP159_NUP214
Ge1_WD40
DASH_Ask1
Beta-prop_WDR19_2nd
DUF465
Motif
Other DBs
NCBI-GeneID:
119999715
NCBI-ProteinID:
XP_038703360
LinkDB
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Position
6:11299382..11302748
Genome browser
AA seq
442 aa
AA seq
DB search
MELVIASSSVDAGIGCWELHTGAERLRYKGCASSPRGLACVGGCFLASSQLREPSASSGS
ILYWSWSKPQVEVKSFPEWPINPVAANQEGTYVAGGGSKGDIYLWEVATGRLLKKWRAHY
RAVTCLVFYDNALLISGSEDGSVKVWNLIKIFDVYRVDQGSHLYEHSFSEHTLRVTDIVA
GYGSCNAIIVSASEDRTCKVWSLSKGELLRNIVFPSKIDAIALDPGEHVFYAGSRDGKIY
IAALSAESSSSTEHGMHIVDSISNHSKAVTCLAYAMGQNVLLSGSEDGIIRVWDPKTHNI
IRVFKHAKGPVNNILVVRQPLHLNLQTISHTQGSSRKRGSLLPPPLEKYESKDENTDIRT
MVSLPETCNDPLNAPSLSLQMIDRQIKEFQQQGSATTEMEVERLKQDCKRAMQMVEQWKK
MYDSLHGFCINELLDEDQVGSH
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggaattagtgattgcatcctcatcagtcgatgcgggaatcgggtgctgggagctgcat
actggtgccgagcgactccgttataagggttgcgcctcctcgccccgcggcctcgcttgt
gtcggcggctgcttccttgcgtcgtctcagcttcgggaaccttccgcttcctctggttct
atcctctattggtcctggtccaagccacaagtggaggttaagagttttccggaatggcct
attaatccagttgctgcgaatcaagaagggacgtatgtagccggtggaggttcgaagggg
gatatatacttgtgggaggttgcaactgggagattgcttaaaaagtggcgtgctcattac
agggctgttacatgtttagtattttatgacaatgcgcttttgatttctggctcagaggac
ggatcagttaaagtttggaatctaatcaagatatttgatgtgtaccgagtggatcaggga
agccatctatatgagcatagtttttccgagcatactctgcgggtgactgatattgtggct
ggttatggaagttgcaatgcgattatagtctctgcttctgaggatcgaacatgtaaggta
tggagtttatcaaagggagaattattgagaaatatagtatttccgtcaaaaattgatgca
atagcattggaccccggtgaacatgtcttctatgctggcagcagagatggcaagatatac
attgctgcacttagtgctgaaagctcttccagcacggaacatgggatgcatatcgttgat
tcaatatcaaaccacagcaaggctgttacttgcctagcatatgccatgggtcaaaacgta
ttgctttctggatcagaggatggcatcattcgtgtatgggatcccaaaacccataacatt
atccgcgtgttcaaacatgcaaaaggccctgtgaacaatattcttgtggtcagacagcca
cttcacctaaatcttcagacgatatcacatacgcaaggttcttccagaaagcgtggatca
ttgttaccacctccactggagaaatatgaaagtaaagatgaaaacactgacatcaggacc
atggtctctctgccggagacctgcaatgatccattgaatgctccttcccttagcctacaa
atgattgatcgccaaatcaaagaatttcagcaacaaggctctgctacaactgagatggag
gtagaaagactaaagcaggactgcaaaagagctatgcaaatggttgaacaatggaagaaa
atgtatgacagtttacatggattctgcataaatgagcttttggatgaagaccaagtagga
agccattga
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