Tripterygium wilfordii (thunder duke vine): 120000178
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Entry
120000178 CDS
T07256
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120000178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120000178
03041 Spliceosome [BR:
twl03041
]
120000178
03032 DNA replication proteins [BR:
twl03032
]
120000178
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
120000178
Spliceosome [BR:
twl03041
]
Complex A
U1 snRNP components
Sm proteins
120000178
U2 snRNP components
120000178
Complex B
U1 snRNP components
120000178
U4/U6.U5 tri-snRNP components
120000178
Complex C
U2 snRNP components
120000178
DNA replication proteins [BR:
twl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
120000178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6897
Motif
Other DBs
NCBI-GeneID:
120000178
NCBI-ProteinID:
XP_038704047
LinkDB
All DBs
Position
6:12481464..12483828
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AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGSSLGVGRGRAIAMRAKAQASGRGA
APGRGAAPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaagcttagggattccggtgaagctactgcacgaggcttcagggcacgtggtg
acggtggagctgaagagcggagagctttacagaggtagcatggtcgagtgtgaagataac
tggaattgccaactcgagaacatcacctatactgcgaaggatgggaaggtgtcacagctt
gagcatgtatttattcgaggcagtaaagtgaggttcatggtcataccggacatgctgaag
aatgctccgatgttcaagcgtttggatgccagaatcaagggtaagggctcatcacttgga
gttggtagaggcagagctattgccatgcgagctaaagctcaagcttctggtcgtggcgca
gcacctggtagaggtgcagctcctcctgttcggaggtag
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