Tripterygium wilfordii (thunder duke vine): 120000192
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Entry
120000192 CDS
T07256
Name
(RefSeq) probable rhamnogalacturonate lyase C
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
120000192
Enzymes [BR:
twl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
120000192
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Gene cluster
GFIT
Motif
Pfam:
CBM-like
Rhamnogal_lyase
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
EMC7_beta-sandw
Endotoxin_C
Motif
Other DBs
NCBI-GeneID:
120000192
NCBI-ProteinID:
XP_038704062
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All DBs
Position
6:9081189..9084820
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AA seq
538 aa
AA seq
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MRIWNLSLDGKLVPLDIDLRYVLLRNSSGFYSYAIFKHSKEWPSSSFGSARLVFKLSKDK
FRYMAISDKRQRYMPLPEDRKSDRADSLAYREAVRLVKPKERQFKGEVDDKYQYSVESKD
LKVHGWISTDKRSTGFWQITPSNEYRSGGPLKQELTSHVGPTCLTVFLSGHYVGDALEVK
IAANETWKKVYGPVFIYFNSASTSDAKSQLWQDAKRQMKTEVQNWPYCFPASEDFPKPNQ
RGSVTGRLSVLDRTSIPARDAHVGLALPGTASSWQTESKGYQFWTRTNDEGYFSISGVRP
GTYNLYAWVPGFIGDYVYDVLVNVTADSPVKVGNLVYEPPKDGPTLWEIGIPDRSAAEFF
IPDPNPKYINKLYVNDTDNKFRQYGLWERYAELYPNGDLVYDVSSSDYRKDWFFAQVTRR
VGDNFEATNWQIKFRLDRVHRTKTYKLRVALASESLSDLEVRINNENSYRPMFSTGVIGT
DNVIARHGIHGLYYLFNFDVPGSPLVAGDNTIFLRQRRGGGPFVGIMYDYIRFEGPPS
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgagaatttggaatctctctctcgatggcaagcttgttcctttggacattgacttgagg
tatgttttgctgcgcaattcgtcgggtttctactcctacgccatcttcaaacactccaag
gaatggccttcttccagctttggttctgccaggcttgtgttcaagctttcgaaggacaag
tttcgttatatggctatatctgacaaaaggcagcgttacatgccactccctgaagatcga
aaatcagatagagcagattccctagcttatagggaggcagtaagacttgtcaaaccaaag
gagcgtcaattcaaaggagaggtggacgacaagtaccaatattcagtggaaagcaaagac
cttaaggttcatgggtggatatccacagataagcgatcaactgggttctggcaaattaca
cccagcaatgagtaccgatcaggcggacccctcaaacaagagcttacctcccatgtgggt
cccacatgccttacagtatttctgagtggacattatgttggagatgctttggaagtaaaa
attgcagccaatgaaacatggaagaaagtttatggtcctgtttttatatattttaattct
gcctcgactagtgatgccaaatctcaactttggcaggatgctaaaagacagatgaaaact
gaagttcaaaattggccctactgtttcccagcttcagaagattttccaaaaccaaatcaa
aggggtagtgtcacaggcagattgtccgtcctggataggacctctatacctgcgagggat
gctcacgttggcttagcacttccaggaactgctagctcttggcaaacggaaagcaagggt
taccaattctggacaagaacaaatgatgaaggctatttttcgatctctggtgttaggcct
ggtacctacaatctttatgcatgggttcctggcttcattggagattacgtatatgatgtg
ttggtcaatgtaactgcagactctcctgttaaagttggtaatctggtatatgaacctcca
aaggatggcccaacgttgtgggaaataggtatccctgacaggtctgcggcagaattcttt
attcctgatcctaaccccaagtatatcaacaagctttatgtcaacgatactgataacaag
tttaggcaatatggcctatgggaaagatatgcagagttgtatccaaatggagatttggtc
tacgatgtcagctccagtgactatagaaaagattggtttttcgctcaagttaccaggcgt
gttggtgacaattttgaagcaactaattggcaaatcaagtttagacttgaccgcgtgcat
aggaccaaaacctataaactaagagtggcactagcaagtgaaagcctatctgatttggag
gttcggattaataatgagaactcatatcgtcctatgttttctaccggagttattgggacg
gataatgtcattgcaagacatggaattcatggactttactacctgttcaactttgatgtg
ccaggcagtccgcttgtggcaggggataataccatttttctgagacaaagacggggcgga
ggccctttcgtaggcatcatgtatgactatattcgtttcgaaggtccaccatcttag
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