Tripterygium wilfordii (thunder duke vine): 120000283
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Entry
120000283 CDS
T07256
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl04120
Ubiquitin mediated proteolysis
twl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120000283
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120000283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
twl04121
]
120000283
Enzymes [BR:
twl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120000283
Ubiquitin system [BR:
twl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120000283
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120000283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_EML
zf-C3HC4_2
Beta-prop_HPS5
EIF3I
WD40_like
Beta-prop_TEP1_C
zf-C3HC4
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
U-box
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
zf-C3HC4_4
Beta-prop_Vps41
Beta-prop_SCAP
zf-RING_5
DUF1664
zf-Nse
zf-RING_10
DDRGK
Motif
Other DBs
NCBI-GeneID:
120000283
NCBI-ProteinID:
XP_038704219
LinkDB
All DBs
Position
6:complement(1674626..1683234)
Genome browser
AA seq
675 aa
AA seq
DB search
MEEVSTGAIVPAVKPETNLSSGTDPPERATATVSSTGATAVADEEFLEVDKDFLCPICMQ
IIKDAFLTACGHSFCYMCIVTHLRNKSDCPCCGHFLTTNQLFPNLLLDKLLKKTSARQIS
KTATPVDHFHRALQQGCEVSIKDLDTLLSLLAEKKQKMEQEEAERNMQILMEFLQYLKKQ
KVDELNEVRTDLQFIKEDIDAVESHRLELFHTRDRFSMKLRVLGDDLSARKPWTALVDKN
CSGSISSSHIIRGGMSSGNIPNKKLDLKAQVSSHGLQRKDASSGVSQSSLSVVRKKRVHV
QFNDLQECYLQKRRQLANQPHKQQERDKTVINRAGYSAGLAEFQSVLSTFTQYSRLKVIA
EIRHGDLFHAANIVSSIEFDRDDELFATAGVSRRIKIFDFSTVVNERTDVQCPVVEMSTR
SKLSCLSWNKYDKHHIASSDYEGIVTVWDATTRQSVMEYEEHEKRAWSVDFSHTDPSMLV
SGSDDCKVKVWCTNQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYFDIRNSSQ
PLHVFSGHKKTVSYVKFLSNNELASASTDGTLRLWDVKDNLPVRTFRGHSNEKNFVGLTV
NSDYIACGSETNEVYVYHKEICKPVTWHRFGSPNTDDTDEDAGSYFISAVCWKNDSPTML
TANSQGTIKVLVLAT
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtctcaacgggggctatagtccctgcagtgaagccagagaccaacctttcc
tccggaactgacccacctgagcgtgccaccgccaccgtttcttctaccggagccactgct
gtggcggatgaggaattcttggaggtggacaaggacttcctgtgtccgatttgtatgcag
attataaaagacgcattcctcacggcctgcgggcatagcttctgctacatgtgcatagtc
actcatcttcgcaacaagagcgattgcccctgttgtggccattttctcaccaccaatcag
cttttccctaatctcttgctcgacaagctattgaagaagacatctgctcgtcaaatatca
aaaactgcgacacccgtggatcattttcatcgtgcattgcagcaggggtgtgaagtgtca
ataaaggatctagatacccttttgtcacttcttgcggagaagaagcaaaaaatggagcaa
gaagaagcggagagaaatatgcaaatactaatggaattcttgcagtatttgaagaagcaa
aaagttgatgaattgaatgaggtgcgaactgatctccagtttataaaagaggacatagat
gctgtagaaagtcatagattagagttgtttcatacaagggacaggttctcaatgaaattg
agagtgcttggagacgatttaagtgcaagaaaaccgtggactgcattggtagataagaac
tgtagtggttccatctccagttctcacattataagaggagggatgtcttcagggaatatc
ccaaacaagaaattggatttaaaggctcaagtaagctcccatggtcttcagagaaaggat
gcttcaagtggggtgagtcaatctagcctgtcggtggtaagaaagaagcgggtccatgtg
cagttcaatgacctgcaagagtgttacctgcaaaagcgacgtcagttggcaaaccaaccc
cataaacaacaggaaagggataaaactgttataaatagagctggttatagtgcaggcctt
gcagagtttcaatctgttctcagtaccttcactcaatacagccggctgaaggtcattgcc
gaaatcaggcacggggatctatttcacgcggccaatattgtatcaagcatagaatttgat
cgcgatgatgaattgtttgccactgctggagtttctcgacgaatcaagatttttgatttt
tctacagttgtgaatgagcgtacagatgtgcagtgtcctgttgtggagatgtctactcgt
tctaaacttagttgcttgagttggaacaaatatgataagcatcatattgccagtagtgat
tacgagggaatagtgacagtttgggatgcaacaactcggcagagtgtgatggaatatgaa
gagcatgaaaaacgtgcatggagtgttgatttttctcacacagatccctcaatgcttgtg
tctggcagcgatgactgcaaggtaaaagtttggtgcacaaatcaggaggcaagtgtactg
aacattgacatgaaagcaaatatatgttgtgtcaagtataatcctggatctagcaattac
attgcggttggttcagcggatcatcacatccactattttgatataagaaacagcagccag
ccactgcatgtgttcagtgggcacaagaaaactgtttcatacgtgaagttcttgtctaac
aatgagcttgcttctgcatctacagatggcacattgcggttatgggatgtgaaggacaat
ttaccggtacgtaccttcagagggcactccaacgagaaaaactttgttggtcttacagta
aacagcgattatattgcctgtggtagcgaaacaaatgaagtatatgtctaccacaaggag
atctgtaaaccagtaacatggcataggtttggttcacccaatacagacgatactgatgag
gatgcaggatcttacttcatcagtgctgtctgctggaagaatgatagtcctacaatgctg
actgcaaacagccagggtaccattaaagtattagttcttgcaacttga
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