KEGG   Tripterygium wilfordii (thunder duke vine): 120001499
Entry
120001499         CDS       T07256                                 
Name
(RefSeq) histone deacetylase 9-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
twl  Tripterygium wilfordii (thunder duke vine)
Pathway
twl03082  ATP-dependent chromatin remodeling
twl03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:twl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    120001499
   03083 Polycomb repressive complex
    120001499
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:twl03036]
    120001499
Enzymes [BR:twl01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     120001499
Chromosome and associated proteins [BR:twl03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     120001499
   HDAC complexes
    Sin3A-HDAC complex
     120001499
    BRAF-HDAC complex
     120001499
    REST complex
     120001499
    SHIP complex
     120001499
    MiDAC complex
     120001499
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     120001499
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    120001499
  Chromatin remodeling factors
   NuRD complex
    120001499
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 120001499
NCBI-ProteinID: XP_038705788
LinkDB
Position
7:2556835..2561855
AA seq 430 aa
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLQRITPDTLHLFSSDLARYNLGEDCPVFDNLFEFCQIYAGGTIDAACRL
NNQQCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHDDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDVKDVGEREGKYYAVNVPLKDGIDDTSFTRLFKT
IISKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPHHSLRIPSGHIENLNSKSYLSTIK
MQVLENLRYIQHAPSVQMQEVPPDFYIPDFDEDDQNPDERMDQHTQDKLIQRDDEYYEGD
NDNDHQMDTS
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctcaaaagatagaatttcctatttctacgacggggatgttggtagcgtttacttt
ggtccaaaccatcccatgaaaccacaccggctctgtatgacccaccatctggtcctctca
tacgagctccacaagaagatggaaatttatcggccacacaaggcatatccagttgagctt
gcccaatttcactcagcagattatgttgaatttttacagagaatcactccagatactcta
catttgttctccagtgatttggctagatataatcttggagaagattgtcctgtcttcgat
aatttatttgaattttgccaaatatatgctggtggaacaatagatgccgcgtgcagattg
aacaatcagcaatgtgacattgctattaattgggctggtggattacaccatgccaagaag
tgtgaagcgtcaggcttctgttacatcaatgatctggttttagggatcttggagcttctc
aagtatcatgcccgtgttttgtatattgacatagatgtgcatcatgatgatggagttgaa
gaagctttttatttcacagacagggtgatgactgtcagttttcacaagtacggagatcta
ttctttcctggaactggtgatgttaaggatgtaggagaacgggaaggaaagtactatgcc
gtaaatgtacccctcaaggatgggatagatgacacgagctttacccggcttttcaagacg
attatttccaaggttgttgaaacatatcaaccgggtgtgatagttctccaatgtggggca
gattcacttgctggggaccgcttgggctgcttcaatctctctattgatgggcatgctgaa
tgtgtcaagtttgtgaaaaaattcaatctgcccttactggttactggaggtggggggtat
acaaaagagaatgttgctcgttgttggactgttgaaacaggagtgcttttagacacagaa
cttcctaatgaaatcccagagaacgagtatatcaaatattttgccccgcaccactctctg
aggattccgagcggacacatagagaatttaaatagcaagtcatatcttagcacaattaaa
atgcaagtgttggagaatcttcgctacatccaacatgctcctagtgtacagatgcaagag
gttccgcctgacttttatatccctgattttgatgaagatgaccagaaccctgacgaacgc
atggatcagcacacccaggacaagcttatccagcgtgatgatgaatattacgagggagat
aatgataatgatcatcaaatggacacttcatga

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