Tripterygium wilfordii (thunder duke vine): 120001936
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Entry
120001936 CDS
T07256
Name
(RefSeq) uncharacterized protein LOC120001936 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120001936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120001936
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120001936
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N
DUF2921
Motif
Other DBs
NCBI-GeneID:
120001936
NCBI-ProteinID:
XP_038706389
LinkDB
All DBs
Position
7:complement(6051431..6082319)
Genome browser
AA seq
1972 aa
AA seq
DB search
MASSKSVDASLWWDPFNSLLTELENAPMSSDLPPHLCKKLKDNHAWFVDTVSLFKPPNEK
SKDALNSQKVIIGSHELNIRPDLKENALRISSYLGLDEVQSYILVDRSLESNNVDFDSIV
RDSLHAILLCYYVERQCLLKCTRQILMHALFVGSNFKEDNVVKEEAQKLITDGLESQMIC
VLENLLSSTHPEQMDVDLFTLWAEETLTEDNLVLEILFLVYYESFCTCTGEKWINLCTIY
KGIILGSYNIEKLAISTEALQSTYDAKVQLLLILIESLDIKNLLQMVHDALPFRAGNSIF
SLTDIQQIDSLISSFSAFETKEAGPLNLAWAVFLCLITSLPGNERNELMEFDHVGYVRQA
FEAASLSRFLEILQSELLTASDGPAAGYRSVLRTFISAFIASYEINLQFEDSTLNLILDI
LCKIYQGEESLCIQFWDRESFIDGPIRCLLCNLEGEFPFRSLELVRLLSALCEGSWPAEC
VYNFLDKSVGISSLFEITSEALVDDNAQIVETHIPLHIPGIDGLLIPSKTRGHVLKVIDG
NTAIVRWEYQQSGVLVLLLHLSQELYLDSNEEVLLTFDLLSRLVSFNMAVCFSLMDIGNS
LHLQATRTNREVEKNFWVVEVICTVIRNLPLNPFGAAVMSRGVNILANLLKCSPSHVSAI
ALKADIFDIASKSNAFNVCYNGSLSGSWLLSGKLAKMLLIDCEQNDYDFPLAISVLHFTM
QLLEAGLENDFLLALIAFTVQYILVNHEYWKYKVKHARWKVTLKALEVIKTCIISIPYYE
KLGRVLQDMLLADSSVHSTLFRIVCTTPQALENLYMSRLFDPKEIEGLQVAIASVMNILY
LMLSKFSKGMTSSLPMFHQAILSPAVRPISVPAAVISLSSYFRCPPIQVGSARLLTMLLI
TADYAQPFLHGNACFSLDDKQIADIRYSINRILLEQSMWNEDLFLATINVLTAAARYQPA
FLVAIFPSKVNVDASVNDPGGVKRLADETSFGTPDLDKSCPIDLLLQYVEKSANFMKSNP
RILFNVLDFLKALWQGAGHYIYILESLKRSEKFWKKLCNSVSSFAISDAPSVESLTEIEA
QKWAFKHHCRCAALETMALDMFLQKKLLFSEALLKGSSELKERTESAEKAKSVIDVELKG
ILSSWCEKSVLGSLIRSYTYSQYDNSTFFRAKVAASAITVLVMGKLAGGDSGSLSISLLE
KILGICEKLKCQPAFSELAAQYKGRGYSDGKELHTLILSDLYYHLQGELDGRKIGPGPFK
ELSQFIIASNCFQAYQCKRDSDISINSKDEALFDIARVRADLGLDKWDYSEWKTSKEIVN
AMLDWFKYANSMVLLASSRFYALKALITVLTLYEDNSRGNTTGGKIPEQLVSSCVDHICQ
YFHTAVESLAPVLDASEDVLDFLGAQAELLLHLMRSVWKSLPLSDCVLVLKTAGFGLKVL
FDFHSSVSRVNTVIKLLLVLQLLAVEIICQSPHLGGVNDAESVKVAEVSNLSLGLIPTLC
TGIATVEHWTLALTTIDLILRCVLTPQTWFPVIRKHLPLQHLTVKLQDKSSLASIPGILK
FFLTLAYVRGGAEMLLSVGFFSSLRMLFADLSDDRSSTVIMNKKSPFTLSDGTEKPQKIW
GLGLAVVTAMVHSLGDTASCADIVENMIPYFFSEKFYLISFFLNAPELPTNNNDKKRLRA
QRTQISLSDLRETEHTLMLMCVLAKHWNLWVKSMKEMDSQLREKCIHLLAFISRGTQWLG
DLPRNTAPLFCPPALKEEFDWCKKPSHVNSRNGWFALAPLGCEAMPNLSAVSNATSALLI
VGQSTEGTNLASHTVFSDSVALQIYVIAFLLLRFLCLQAEGASERAEELGFVDLAHFPEL
PMPEILHGLQDQASAIVSEVCETNKSKHIHAATQSVCHLLLQIMEMALYLELCVLQICGI
RPVLGRVEGFSKEIKLLFKAMEGHAFLKDSVKSLKQIISLLYPGLLQSEGLL
NT seq
5919 nt
NT seq
+upstream
nt +downstream
nt
atggcgagctcgaagtcagtcgatgcctccctctggtgggaccctttcaattccctcctc
actgaactcgaaaacgctcctatgtcgtcggacctccctcctcacctatgcaaaaagttg
aaagacaatcacgcgtggttcgtagacaccgtgtcgctcttcaagccgccgaacgagaaa
tcgaaggacgctttgaactcacagaaagtgataattggctctcacgaattaaatatacgc
cctgatttgaaagaaaatgcgttgcgaatcagctcctacttgggtttagatgaggtgcaa
tcgtacattcttgtggataggtctctggagagcaacaatgtagactttgattctattgtt
cgagactctctacacgcgattttgctttgttattacgttgagcgacagtgcttgctgaag
tgtaccaggcagattctcatgcatgctttatttgttgggagtaactttaaagaagataat
gtagtcaaggaggaggcacaaaagctgattaccgatggattagaaagccaaatgatctgt
gtcttggagaaccttctatcttccactcatccagagcaaatggatgttgatcttttcact
ttatgggctgaggagacactgactgaagacaatttggttttggaaattctattccttgtg
tattacgagtcattttgtacttgtactggtgagaagtggataaatttatgcacgatctat
aagggaattatacttggttcttataacattgagaagctagcaatatcgactgaggcactg
cagtctacttatgatgccaaagttcagttgctactcatacttatcgaatccctggacatc
aaaaatcttctacaaatggttcacgatgcgttgcctttcagggcgggcaattcaattttc
tctttgactgatatccaacagattgattcactaatatccagttttagtgcttttgaaaca
aaagaagctggcccgctaaatctggcatgggcagtgtttctctgtttgattacatcactt
ccgggaaatgagagaaatgagcttatggaatttgatcatgttggctatgttcgtcaagcc
tttgaagctgcttcattaagtcgttttctggaaattcttcaaagtgagttgttaacggca
tcagatggacctgcagctggttaccgaagtgtcctgcgaacttttatttctgcatttatt
gcatcgtatgagattaatcttcagtttgaagacagtaccctcaacttaattttggatatt
ctatgcaagatttaccaaggagaggagtcactttgtatccagttctgggacagggagagt
ttcatcgatggtcctatccggtgtcttctttgcaacttggaaggagaatttcctttcagg
agtctggaacttgttcgccttttatcagcactctgcgaaggaagttggcctgccgaatgt
gtgtataactttctagataagtctgttggtatatcgtccctgtttgaaattacaagtgag
gccttggtggatgacaatgctcagattgttgaaactcacattccactccatatccctgga
attgatggtttgctcattcctagcaaaactcgtggacatgtcttgaaagtcattgatggg
aacactgctatcgtgcgctgggagtatcaacaatccggggtgcttgtattgctattgcat
ttgtcccaggagctttatctggatagcaatgaggaagttcttctcacttttgatctgctc
agtcgacttgtttcctttaacatggctgtatgtttttctttgatggatattggcaactca
ttacatcttcaagccactcgaacaaatagagaagtggagaagaatttttgggtggttgag
gtcatttgcactgtgataagaaatttacctcttaatccctttggtgctgcagtcatgtca
aggggtgtcaacatattggcaaatttattgaaatgctccccctctcatgtttccgccatt
gctctgaaagcagatatctttgatattgcctcaaagtccaatgccttcaatgtgtgttat
aatggctccttgagtgggtcgtggctgttatccggaaagcttgcaaagatgcttttaatt
gactgcgagcagaatgattatgacttcccattagctatatcagtattgcacttcaccatg
cagcttcttgaggcaggattggagaatgattttcttttggctttgattgctttcacggtg
caatatatactagttaatcatgagtactggaaatacaaggtgaagcatgctcggtggaaa
gtaacactaaaggcacttgaagtgatcaaaacatgcataatctcaatcccatactatgaa
aagttgggcagagtcctccaggatatgttgctagctgattcttctgtccacagcactctc
tttcgaatcgtttgcacaacaccacaagccttagagaacctttatatgagccgcctcttt
gacccaaaggagattgaaggcttgcaggttgctatagcttctgtcatgaatattttatat
ctcatgctttccaaattttctaagggtatgacatccagccttcctatgtttcaccaagcc
attctgtcacctgcagtcagaccaatttccgttcctgcggctgttatatccttgtcatcg
tattttcgctgtcctccaatacaggttggctctgctagactacttaccatgctgttgatt
acggcagattatgcacaaccttttttgcatgggaatgcatgttttagtctggatgataag
cagattgcagatattaggtattctattaaccgcatattacttgagcagtcaatgtggaat
gaagacctatttttggctacaatcaatgtgctcaccgctgcagcgcgttatcagcctgca
tttcttgttgctattttcccttcaaaagtgaatgtggatgcatcagtgaatgaccctggt
ggcgtgaaaaggcttgcagatgaaacttcctttgggactccagaccttgacaaatcttgt
ccgatagatctactgctgcaatatgttgagaaatctgccaattttatgaagagcaatccc
cgcatactgttcaatgtgcttgatttcctgaaggcattgtggcaaggggctggccattac
atatatattttggaatctctgaaaaggtctgagaagttttggaagaagttatgcaactct
gtttcatcatttgctatatcggatgctccttcagtggaaagtttgactgaaatagaggct
caaaaatgggcattcaaacatcattgccgctgtgctgcattggaaacaatggcattggac
atgttcctccagaaaaagttgttattttctgaggcacttctaaaaggatcctctgaattg
aaggagaggacagaaagtgctgaaaaagcgaagtctgtgattgatgttgaattgaagggt
attttgtcaagttggtgtgagaaatctgttttaggcagcctcatcagatcatatacatat
tctcaatatgacaacagtacattttttcgtgcaaaggttgctgcaagtgcaataacagta
cttgtgatgggtaaattagctggtggagattcaggaagtttgtctatttcattgctggag
aagatccttggcatctgtgaaaaattgaaatgtcagccagcgttttctgaattggctgcg
caatacaaaggacggggttacagtgatggtaaggagctacacacactaatactcagcgat
ctttactatcatctacaaggagaacttgacggccgaaagattggtccagggccattcaaa
gaactctcccaatttataattgcatcgaattgttttcaggcttatcagtgtaagcgtgac
tctgacatttctataaattcaaaggatgaagctttgtttgatattgcacgagtccgagca
gatttggggttggacaagtgggattattcagagtggaagacgtccaaagaaattgtaaat
gcaatgttggattggttcaagtatgcaaactcaatggtgttgcttgctagttcgaggttt
tacgcactaaaagcattaataactgttttgactttgtatgaggataattcaagggggaat
acaactggagggaagatccctgagcaacttgtttcttcttgtgttgatcacatatgccaa
tatttccacactgcagtggaatcactagctccagtactggatgcatctgaagatgtcctt
gacttccttggagctcaagcagaactacttctccatcttatgagatctgtatggaaaagc
ctgccattatctgattgtgtacttgttttaaaaactgcgggttttggcctcaaggtgctc
ttcgacttccactcatcagttagtagggtaaatacagtaatcaagcttttacttgtgtta
caacttttggctgtagaaattatctgccaaagcccgcatttgggtggggtgaatgatgcg
gaatcggttaaagttgctgaggtttctaatttgagcttagggctaataccaactctctgc
actggcattgcaactgttgaacattggactctcgcccttactaccattgacttaatacta
agatgtgttttgacaccccagacttggtttccagttatacggaaacatctccccttgcag
catttgactgtgaagcttcaggataaaagttctcttgcatcaattcctggtatattgaag
ttctttttgacccttgcatatgtcaggggtggtgctgagatgcttctgagtgttggtttt
ttctcctccctaagaatgttgtttgctgacttatctgatgatagatcttccaccgtaatc
atgaacaaaaagagtcccttcactttatctgacggaactgaaaagcctcaaaagatttgg
gggcttggcttggctgtggtcactgctatggttcattccctgggagacactgcttcttgt
gctgatattgtggaaaatatgataccttacttcttttctgagaaattttatctgatttct
ttttttctcaatgctcctgagttaccaaccaataacaatgacaagaaaagacttcgggca
caaagaactcaaatttctctctctgatcttagggaaacagagcataccctcatgcttatg
tgtgtcctagcaaaacattggaatttgtgggttaagtctatgaaagaaatggattcgcag
ttgagggagaaatgcattcatcttttggcatttattagccggggaactcaatggcttgga
gatttgccaaggaatactgcccctctcttttgccctcctgccctcaaagaggagtttgat
tggtgcaagaaaccatcacatgtcaacagcagaaatggatggtttgctcttgcacccctt
ggttgtgaggcaatgccaaacctttcggctgtctcaaatgcaacatctgctctcttaatc
gtgggtcagtcaactgaaggcactaatcttgcttctcacacagttttctctgattctgtt
gctctgcaaatatacgtgatcgcatttcttcttttgagatttctctgtttacaagctgag
ggtgcttctgaaagggccgaggagttgggttttgttgatcttgctcattttcctgagctc
ccaatgcctgagatattacatggcttacaggatcaagcaagtgctattgtttctgaagtg
tgtgagacaaacaaatcaaaacatattcatgctgcaacccagtctgtctgtcacttactc
cttcaaatcatggaaatggctttgtacttggaattgtgtgttttacaaatatgtggaata
agaccagttttggggcgtgtggagggtttttcgaaagaaatcaaattactgtttaaagca
atggagggccatgcattcttaaaagactcagtgaagtccttgaagcagataatatcactt
ctttaccctggactgttacagagcgagggccttttgtga
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