Tripterygium wilfordii (thunder duke vine): 120002224
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Entry
120002224 CDS
T07256
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120002224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120002224
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120002224
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120002224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120002224
NCBI-ProteinID:
XP_038706828
LinkDB
All DBs
Position
7:complement(1202934..1209130)
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AA seq
662 aa
AA seq
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MSGLLNSSLNGSASNLPDSTGRSFATSFSGQSGAASPIFHHSGPIQGLQNIHGSFNVPSM
PGTLTSRNSTMNNVPSGGVQQPTGSLSGGRFGSNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFTSNTNGVGVSIPGILPTSATIGNRNAVPGLGVSPILGNAGPRITSSMGNMVG
GGNIGRNINSGGGLSIPGLVSRLNLSANSGSGSLSVQGQNRLMSGVLPQGSPPVISMLGN
SYPPTGGPLSQSHVHAMNNLSSMGMLNDVNSNDNSPFDINNDFPQLTSRPSSAGGPQGQL
GSLRKQGLGVSSIVQQNQEFSIQNEDFPALPGFKGGNADYAMDVHQKEQLHDNAMSMMQP
QHFSMGRSTGFNLGGSFSSYRPQQQQQHAPSVSGSGVSFSSVNNQDLLHGSDIFPSSHST
YHSQASGPPGMGLRPLNSPNTVSGIGTYDQLIQQYQQNQSQFRLQQMSAVSQSFRDQGGM
KPMQAAQSIPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKNFGSPWS
DEPAKGDPEFTVPQCYYAKQPPALHQVYFTKFSHDTLFYIFYSMPKDEAQLYAANELQNR
GWLYHKEHRLWFSRVAEPLVKTNTYERGSYHCFDPISFEIIRKDNFVLHYEMMEKRPALP
QH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggttacttaattcttctcttaatggatcagcttcaaatcttccggacagtact
ggacgatcttttgccacatctttttctggacagtctggtgcagcctctcctatttttcac
catagcggacccattcaggggttgcaaaacattcatgggagcttcaatgttccaagcatg
ccagggacacttacgtcgaggaactcaacaatgaataacgtgccttctggtggggttcaa
caacctactgggagcctctctggtggaaggtttgggtccaacaatcttcctgttgctctt
tctcagctatctcatggcagctcccatggacattcaggagtcacaaatagaggaggtatt
agtgttgtaggaaaccctggatttactagtaacacaaatggagttggtgtttctattcct
gggattcttccaacctctgccactattggtaaccggaatgctgttccaggattgggagtt
tccccaattttgggaaatgcaggtcctaggattacgagttcgatgggaaacatggttggt
gggggcaacatcggaaggaacataaactctggtgggggattatctattcctggccttgta
tctcgcctaaatctcagtgcaaatagtggatctggaagcttaagtgtgcaaggacaaaat
cgattgatgagtggagtgcttccacaaggatccccgccggtaatttctatgttaggaaat
tcttatccccccactggaggtccactctcgcaaagtcatgtccatgcgatgaacaatctg
agctctatgggcatgttgaatgatgtgaactctaatgacaattcaccctttgacataaat
aatgattttcctcagttgacaagtcgtcctagttctgcaggaggtcctcaaggacaattg
ggttctttaagaaagcagggtcttggagttagtagcattgttcaacaaaaccaagagttc
agcatccaaaatgaagatttcccagctttacctggatttaaaggtggtaatgctgattat
gctatggatgtgcaccaaaaagaacaacttcatgataatgccatgtcaatgatgcaacct
cagcatttctctatgggaagatctactggctttaacttgggaggatctttttcgtcatat
cgtccacagcagcaacagcaacatgctccttctgtcagtggtagtggtgtctctttttca
tctgtaaacaatcaagatcttctccatggctcagatatatttccatcttcgcattcaacc
tatcattcacaggccagtggaccaccggggatgggtctaagacctctaaattctcctaat
acagtttccggtattggtacatatgaccagcttattcagcagtatcaacagaatcagtca
cagttcagattacaacaaatgtcagccgtaagtcaatcatttagggatcagggaggcatg
aaaccaatgcaggcagcgcaatctattccagatccctttggtttgctcggcttgttgagt
gttataaggatgagcgatcctgatctaacctcactagctcttggaattgatttgacaact
cttgggttgaacttaaattcgacagagaatctccacaagaattttggttcgccatggtct
gatgaaccggccaagggtgatccagagttcaccgtgcctcaatgttattatgctaagcag
ccacctgctctacatcaagtctattttacgaaattctctcatgatacattgttttacata
ttttacagcatgccgaaagatgaagctcaactgtatgctgccaatgaacttcaaaatcga
ggatggttatatcacaaagagcatcggttgtggttttcacgagttgccgagccacttgtc
aagacaaacacttacgagaggggatcttaccattgttttgatcctatttcgtttgaaata
atccgcaaggataattttgtgctccactacgagatgatggagaagagaccggcactacct
cagcattaa
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