Tripterygium wilfordii (thunder duke vine): 120003448
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Entry
120003448 CDS
T07256
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120003448
09123 Folding, sorting and degradation
03018 RNA degradation
120003448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120003448
03041 Spliceosome [BR:
twl03041
]
120003448
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120003448
mRNA degradation factors
5'-3' decay
Lsm complex
120003448
Spliceosome [BR:
twl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120003448
Complex C
U2 snRNP components
120003448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
120003448
NCBI-ProteinID:
XP_038708368
LinkDB
All DBs
Position
8:10607964..10610910
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttctcgtatttcaaggacttggtggggagagaagtgacggtggagctgaag
aacgatttggcaatcagggggacccttcactcggtggatcagtacctcaacatcaagctc
gagaacaccagggttgttgatcaagacaagtatcctcacatgctttcagtaagaaactgt
ttcatcagaggttcggtggtgagatacgttcagctccctcccgatggcgttgacattgaa
ctgctccacgatgccacaagaagagaagctcggggtggctga
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