Tripterygium wilfordii (thunder duke vine): 120003456
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Entry
120003456 CDS
T07256
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120003456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120003456
03012 Translation factors [BR:
twl03012
]
120003456
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120003456
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120003456
Translation factors [BR:
twl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120003456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
DEAD
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
ATPase
HA2_N
nSTAND3
ResIII
AAA_19
Ank_5
AAA_7
Ank_2
AAA_16
ABC_tran
Sigma54_activat
PhoH
Rad17
AAA_25
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
120003456
NCBI-ProteinID:
XP_038708382
LinkDB
All DBs
Position
8:complement(9475621..9485615)
Genome browser
AA seq
1252 aa
AA seq
DB search
MGKKKDKEQQQTSTPQQTNPTPHQQRQGPNVGESSSINIRRVLEKFLESNREVYTFKANL
SNRERAVVHIVCRKMGLKSKSQGKGNQRRVSVFKTMKQVGAKRAKERLKYFKFSEEAKVV
LQDLFTQYPPDDGLIANTVGSHGGGKRETVQGHCENIFSKPSLSKEGIENKREVLASKMK
KATNLRQIVQQRAKLPIAAFKDIIKSTIESNQVVLISGETGCGKTTQVPQFLLDHMWSKG
KACKIVCTQPRRISATSVAERIASERGENVGGDVGYKIRLESKGGRHTSIVFCTNGILLR
ILVSAGRSKRGTSKKHAKMDISNISHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLIL
MSATLDADRFSQYFGGCPIIRVPGFTYPVEAYYLEDVLSILKSASDNHLDSAMLNVPNED
YKLTSEDKDALDEAISLAWSNDEFVPLLDLISSEGSPQVYNYQHSVTGLTPVMVFAGKGR
VGDVCMLLSLGVDCLLQAKDGTTALELAERENQQEISDVIKKHIENASSDSLVQQQVLDK
YLATIDHELIDVVLIEQLLRKVCTDSKDGAILVFLPGWDDIKRTRERLIANPFFNNTSRF
LIISLHSMVPSMEQRKVFNRPPVGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDP
YNNVSTLQSSWVSKASAKQREGRAGRCQPGTCYHLFSKLRAASLPEFQVPEIKRMPIEEL
CLQVKLLDPDCKIEDFLLKTLDPPVFESIRNAISVLQLIGALSQEESLTELGEKLGYLPV
HPLTSKMLFFAILMNCLDPALTLACASDFRDPFTISMLPNEKKRAIAAKYELASLYGGRS
DQFAVVAAFECWKRAKERGLEAQFCSQYFVSPSTMSMLDGMRKQLQMELIRHGLIPNDVS
HCSLNARDPGILDAVLVSGLYPMMGRLLPPKDGKRSVVETASGPKVRLHPHSLNFRLTFN
KCYDFPLIMYDEITRGDAGMYIKNCSVVGPLPLLLLATEIVVASAKDEEEEEEEEEADEC
DDGSSNGGGDDSDECKMDRDDTLLGQTGDKILSSPDNPVKVVVDHWLSFASTALDLAQIY
CLRERISAAILFKVTHPHEQPPPVLEVSTLAIAYVLSYDGLSGVSLPRESVESLTSILHA
TEINSSKQEMSKGMGLEFLVSLMTDDKCQNSPQRRKARILSSGGIAMVNDPSSSNSQLLG
TSFGTNSSLGPPSQVPTIVGYNPDGNGRCNRRKQPPRQRPLKNWTKITKQVQ
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaaaaaggacaaggagcagcagcagacgagtacgccgcagcagacgaatcca
acgccgcaccagcagcgacagggccctaatgtgggtgaaagttctagcattaacataaga
cgagttctggaaaagtttctagaatctaatagggaagtctacacgtttaaagccaacctg
tcaaaccgcgaacgtgcagtggtacatatagtctgcaggaaaatgggattgaaatccaag
agtcaagggaaaggaaatcagcgtcgtgtatctgttttcaagactatgaagcaggttggc
gctaagcgagcgaaggaaagactcaaatattttaaattctcagaagaggcaaaagtggtt
ttgcaggacttatttacacaataccctcctgatgacgggcttatagccaataccgttgga
agtcatggtggtggaaagagagagacagtacaaggacactgcgaaaatattttctccaag
ccttcattgagcaaggaaggaattgagaataaaagggaagtgcttgcttctaaaatgaag
aaggctacaaacttgagacagatcgttcagcaaagggctaagcttccaattgcagcattc
aaggatatcataaaatccacaatcgagtctaaccaggttgttttgatctctggtgagact
gggtgcggaaagaccactcaggtcccacaatttcttttggaccatatgtggagtaagggt
aaggcatgcaaaattgtgtgcactcaacctcgtcgtatctcagcaacctctgttgctgaa
agaatagcttctgaaagaggagaaaatgttggaggtgatgttggatacaagattcgattg
gaaagtaaaggtgggaggcatacatcaatcgtgttttgcacaaatggcattctattgcgg
attctggtttctgcgggtaggtccaagaggggtacatcaaaaaaacatgcaaagatggac
atctccaacatatctcatattattgtggatgaaattcatgaaagagatcgctactctgat
ttcatgctggcaattatcagggacatgcttccatcatatccccaccttcggctgatcttg
atgagtgctacacttgatgctgatagattttcacaatattttggtggatgtccaatcatc
cgtgtccctggcttcacctatcctgtggaagcttactatctggaggatgtactatctatt
ttgaaatctgctagtgataatcatctcgattcagctatgttaaatgtcccaaatgaagac
tacaagttaactagtgaagataaagatgctttagatgaagctattagtttggcatggtct
aatgatgaatttgttccccttctagatttaatttcttctgaaggatctccccaagtttat
aactaccagcattctgttactggactaacaccagtaatggtgtttgctgggaagggcaga
gtaggtgatgtttgcatgcttctttctcttggtgtagactgccttttacaggccaaggat
gggacaacagcgttggagttggctgaacgagaaaaccaacaagaaatttctgatgtaata
aaaaagcacattgaaaatgcctcttctgattccctggttcagcaacaagtacttgacaag
tatctagctaccattgatcatgaactgattgatgttgttcttatagaacagttgctaagg
aaagtttgcactgattcaaaagatggagcgatccttgtctttctcccagggtgggatgac
ataaaaagaacacgggaacgattaattgcgaacccattcttcaacaatacttcgagattc
ttgataatatcccttcattcaatggtaccatctatggagcaaaggaaggtttttaatcgt
ccacctgttggttgtcgcaaaattattctttcgaccaatatagctgaaactgctattaca
attgatgatgtcgtgtatgtcatagatagtggtcgaatgaaagaaaaaagttatgatcct
tataacaatgtttctactcttcaatcttcttgggtttccaaggctagtgcaaagcaacga
gaaggtcgtgcaggacgctgtcagcctggaacatgttatcatcttttctcaaagctaagg
gcggcttccctgccagaatttcaggttcccgaaattaagagaatgcctattgaggagctt
tgtctacaggttaaattgctagacccagattgcaagatagaggatttcttgctgaagaca
ttggaccctccagtttttgaaagcattcgtaatgcaatttctgttcttcagttgattggg
gccctctcacaggaggaaagtttgacagaactaggggagaagttaggttatttacctgtt
catccattgacaagcaagatgcttttttttgccatattgatgaattgcctggatccagct
ttaacactggcatgtgcctcggactttagagatccttttacaatttccatgttgccaaat
gaaaaaaagagagctattgctgctaaatatgagcttgcttcattatatggtgggcgaagt
gatcaattcgcagtcgtagctgcttttgagtgctggaagagggcaaaggaaaggggccta
gaagcacagttttgttctcagtactttgtctctccaagcaccatgtctatgctggatgga
atgcgtaagcagctccagatggaactaattcggcatggattgatcccaaatgatgtttca
cattgtagtttgaatgctcgtgacccaggtatactcgatgcagtccttgtgtcaggtttg
tatccaatgatggggagattacttccgcctaaagatgggaaacgatctgtcgtggagact
gcaagtggccctaaagttcggttgcatcctcattccctcaattttagattaacatttaat
aaatgttatgatttccctctgattatgtatgacgagataactcgtggagatgcgggtatg
tatataaagaattgctcagttgttgggccacttccattgctgctgctagcaacggagatt
gttgtggcttctgcaaaggatgaggaggaggaggaggaggaggaggaggctgatgagtgt
gatgatgggagtagcaatggcggtggggatgatagtgatgaatgcaaaatggacagggat
gatacgttacttggacaaacaggagacaagatcctgtcctctcctgataatccagttaaa
gttgtggttgaccattggctttcttttgcatcaacagcccttgatcttgctcaaatttac
tgcttgagggagcggatatcggcagcaatcttatttaaagtgacacatccccatgagcag
cctcctcctgttcttgaggtctcaacattggcaatagcctacgttctttcttatgatggg
ctctctggcgtatcattgccaagggaatctgttgagtcgctgacttcaattttacatgcc
actgagatcaactcgtccaagcaagagatgagtaaaggaatgggtctcgaattcctcgta
tcactgatgactgatgacaaatgccagaattctcctcaacgtcgtaaggctaggatactg
tcatctgggggaattgcaatggtgaatgacccatcaagcagcaattctcagctgctgggt
acttcatttggcacgaactcaagtcttgggcctccatctcaagtcccgaccatagttgga
tacaatccagatggtaatggacgatgtaatcgaagaaagcagccaccacgacagcggccg
cttaagaactggactaaaatcactaaacaggtgcagtag
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integrated database retrieval system
