Tripterygium wilfordii (thunder duke vine): 120004098
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Entry
120004098 CDS
T07256
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120004098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120004098
03036 Chromosome and associated proteins [BR:
twl03036
]
120004098
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120004098
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120004098
mRNA degradation factors
5'-3' decay
Decapping complex
120004098
Chromosome and associated proteins [BR:
twl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120004098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Aldedh
DS
DUF3984
Motif
Other DBs
NCBI-GeneID:
120004098
NCBI-ProteinID:
XP_038709268
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All DBs
Position
8:12061001..12068755
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AA seq
515 aa
AA seq
DB search
MNNNNRGRYPPGIGVGRGGEGNTNPNFQSRTPQQQQQYLQRNYVHNHQQFQQQQQHHHNQ
QQHHHNQQQHHHNQQQLQQQQQQQWLRRGQLPVAHSVVDEVEKTVQSEAVDPSSQDWKAG
LKIPAADTRFKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSD
ILARAKNGTGKTAAFCIPALEKIDQENNVIQVVILVPTRELALQTSQVCKELAKHLKIQV
MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGICILKDCSMLVMDEADKLLSPEF
QPSIEQLIRFLSASRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFV
EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV
FHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVN
LITYEDRFNLHRIEQELGTEIKQIPPHINQAIYCR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaacaatagagggaggtatccgcccgggatcggcgttgggcgtggtggagaa
gggaatacgaaccctaacttccagtcgaggacgccgcagcagcaacaacagtacttgcag
aggaattacgtgcataatcaccagcaatttcagcagcaacaacagcaccatcataatcaa
cagcaacaccatcataatcaacagcagcaccatcataatcaacagcagctgcaacaacaa
cagcaacaacagtggctgaggaggggccagttacctgttgcacattccgtggtggatgag
gtcgaaaagacagtgcagtccgaggcagttgacccgagctcacaagattggaaggcagga
ctgaagataccagcagctgatacacgtttcaaaacagaggatgtgacagccaccaaagga
aatgaattcgaggactattttttgaagcgtgagctgcttatgggaatatatgagaagggt
tttgaaaggccttccccaattcaagaagaaagtattccaattgctcttactggtagtgat
atacttgcaagagccaaaaatggtacagggaaaacagctgcattttgtattcctgccttg
gaaaaaattgaccaagaaaacaatgttattcaagttgtcattctggttcccacacgagag
ctggctcttcagacatcacaagtttgtaaggagcttgcaaagcatttgaaaattcaagtt
atggttaccactggtggtaccagtctgaaggatgatattatgcgtttatatcaaccagta
catttacttgttgggactcctggaagaatactagatctcgcaaaaaagggcatttgtatt
ttgaaagattgttcaatgcttgttatggatgaggctgataagcttttgtctccagagttt
caaccatcaatagagcagctgattcgatttctttctgctagtcgtcaaattttaatgttt
tcggccacatttcctgttactgtcaaggacttcaaagatagatatcttcagaagccttat
gttattaatcttatggatgagcttactctcaagggtatcacccagttctatgcttttgtg
gaagaaagacagaaagtgcactgcctaaacactcttttttcaaagctgcaaataaatcaa
tcaattattttctgtaactcagtaaatcgggtagaattgttggctaagaagattacagaa
cttggctactcttgtttctatattcatgcaaagatgctccaagaccatcgtaacagagta
tttcatgacttccgcaatggtgcttgcagaaacctagtttgtactgatctgtttaccagg
gggatagacatccaagcggtgaatgtcgtgattaattttgattttccaaagaactcggaa
acatacctgcatagggttggtcgatctggaaggtttggacaccttgggttggctgtgaat
ttgatcacctatgaggaccgctttaacttgcacaggatcgagcaagagcttggtaccgaa
attaaacaaattcctccacatattaatcaggcaatttattgccgttaa
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