Tripterygium wilfordii (thunder duke vine): 120004331
Help
Entry
120004331 CDS
T07256
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
twl03036
]
120004331
Chromosome and associated proteins [BR:
twl03036
]
Eukaryotic type
Meiosis-specific proteins
Others
120004331
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_PDDEXK_dom
SHOC1_2HhH
SHOC1_ATPase
SHOC1_HhH_tandem
ZIP2_M
Motif
Other DBs
NCBI-GeneID:
120004331
NCBI-ProteinID:
XP_038709573
LinkDB
All DBs
Position
8:710916..724400
Genome browser
AA seq
1644 aa
AA seq
DB search
MRTRFLNTDYFASSSSPIEIPRFLNLPIPHLPPSRLFNYYEDNLPIDSPLDVSLVIERLP
IDLALSKFLAEVIPQPVDVRYEDFEADRFRDNEGSADNEGRKDAETFYEEGEVENHGCFG
SQTLDVELSRENNGTSRDTNNFEIVQFETQVLDVFSESACFFEKEEMQIFFKVLEIEHNV
DMLKPGLTIQYSDEVQESVYSVEDVPVECPMEKTAHVSEDAGSVLDKTKYHLSTFPLLEV
EETNLGFLSNVNVADELISLLENIESHEWTKTDELPISGKGLLGYMGYDIVELHLDHYLS
KQYLESELASLDVFERVDIISTVDSLEMNEDSAFHQWASDSDSSLLASPVIFQEFEVIDV
NSSHLFEIFFDTERIYGLETCDSPFRKDMNFKIFDELIVSNELTLLDDAFKSLPIPIVSD
HARIRSLDIVIEEVLAEVKQEPFSTAHEIYLDWHLLDGDKCNCQTYSPYQNMLAEKDMII
TKFDWKSDNDENLEFNFILSDDALTGPNAEEHRESLNMVSDGIMLDVNINLMGVASSKSS
EEKSPKLENGDQLAGKSSVRASLLFKSMSHFNDFDIFLNPQKANVGANVESSVKALDYNS
TICKASSGYSSAAHTSTGIQFQQWVITLYKVKLSDDILALIDNFEKRYLAILQNETDMIN
APHLYSAANDLKLLSLSKETLMDYIKKRSLHRTTISEDETIMDFFSLCVIKQTAWYLSFF
GIHAAHLYINKISQALECLKSRLGVLQSLIEDSHEKAEREITRSHPLLSVIYEILQPNNA
KNSLKVLIVTDRVFWRPLKHLLMSMEISSSELQESYSDTNQPDGYYSGDVAKDKTDFLLV
SECVLVPHDHVSASFPFNKFSMILEYGGSYGMSRISSLSPQSAVLPRLHFLKVDLDNFGA
CKALCEGFGMTKYFDSSTVEESHSSLRPGEIINLQKLEELLNFVPIRDIRSSETADKVKD
CCMPLPVPCTSHVRESEQIQQGILPFVDRVIIVNTQNIDKDMIVSRRSMYQKILALEKGG
TQVVERDLDLPVDIIISSAICLVWYDCRNIGKKATSLDEASSCLPLCIENIATDILTSLS
FKFGCCILLFEGEINFLSTVMESSDGLYAAAASLGIDLQLFYSYSFESTNEIILGCIRCA
SKLSNCLYPKMPESETLAESFLTKFPSINPLTAHAILSEEMLIEFLECSHDSRIRAIQKY
HVSEEIVALFSALSIYGEREDSKSIMTDCSSSVSSGPDSDKCHMKVGSDIKRQKCIASPP
KVDLRMDKLLHSGIPNELPNGIMLQFSEPCNHWMSKHLDEFDELDMPDSSFYDLFSDKQK
LNSSRVLKTYGDENSKDALILDEFKSSRSSLSEKLFGQNLGLATLSNVDLYPTNKSENHR
DGFIGEVIDLTRSPLVYDKFSIDNVTYSYFAPELEKDSTRKPKIVRRLSFDKSDNPAFQV
DAKVNSGSDVQTFVKDRRQRLQEKGDERNDLEEESMQRSAGVSKQLAFKEGLSHYGATPL
SKAIGSVHPQPGSPWTMEFLNRIREKSRLRQQSLPYEAPSPGNARNTSRATKRRSPSILE
FFRYQGSSSHGKIPGGKRQKQSIRSSSSSKNEGASTPFQPTWTPIDKRARQTLSFAMNGS
ENQAKLVWSDGNTHCPSKKFQNHF
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgttttctcaacaccgattacttcgcctcttcttcctctccaatcgaaatc
ccgaggttcctcaatctcccgatccctcatctacctccttcgcgtctatttaactactac
gaagacaatctccctattgattcgccgctagatgtctctctcgtgatcgagagattgccg
atcgatctagctctctctaagtttttggcagaagtgattcctcaacctgtcgatgtcaga
tatgaagattttgaggctgatcgcttccgagacaatgaaggttctgctgacaacgaaggg
agaaaagacgctgagacattctatgaggagggagaagtggaaaatcacggatgttttgga
tctcaaactctggatgttgaattatcaagagaaaataacgggacttctcgcgataccaac
aattttgaaatagtccaatttgagacacaagtgctggatgtattctcggagagtgcctgc
ttttttgagaaagaggagatgcagattttctttaaagttctagaaattgagcataatgtt
gatatgctcaagcccgggcttactatacagtattctgatgaggttcaagaatcagtttat
tccgtagaagatgttccagtcgagtgtccaatggaaaaaacagcccatgtgtctgaagat
gctggttcagttctggataaaacaaagtaccaccttagcactttccctctattagaagtg
gaagagacaaacctgggatttctttcaaacgtgaatgtggcggatgaacttatttcactt
cttgaaaatattgaatcccatgagtggactaaaacggatgaacttcctattagtggaaag
ggccttttaggttatatggggtatgatatcgtagagcttcatttggatcattatctgtca
aagcagtaccttgaatctgaactagcctccctggatgtgtttgagagagtcgacattata
agcacggtggattctctggaaatgaacgaggactctgcatttcatcaatgggcatcagac
agtgactcttccttgttagcgagcccagttatttttcaggagtttgaggttattgatgtg
aactcatctcatctttttgaaatattctttgacactgaaagaatatatgggctggaaaca
tgtgactctccattcagaaaggacatgaactttaaaatttttgatgaattgattgtcagt
aatgagctaacgctgctagatgacgcattcaaatcattgcctatacccattgtctctgat
catgcaaggataagatcacttgatatcgtaattgaggaggtactagctgaagtaaaacaa
gaacccttctctacagctcatgaaatatacttggattggcatcttttggatggagataaa
tgcaactgtcaaacttattctccctatcagaatatgttggcagagaaagacatgattatc
accaaatttgattggaaatctgataatgatgaaaacttggagtttaatttcattctctct
gatgatgcattgactgggccaaatgcagaagaacacagggaatcattgaacatggtttct
gatggtattatgcttgatgttaacattaatcttatgggagttgcttcaagtaagtcgtcg
gaggaaaaatctccaaaattagaaaatggagatcaattagctggaaaaagttcagtacgg
gcttcgttgctatttaaaagtatgtcacacttcaatgattttgacatttttttaaatcct
cagaaagctaatgttggtgcaaatgttgaatcttctgtgaaggctctagattataattct
accatttgcaaggcttcatctggctactcatcagcagcacatacatctactggtatacag
tttcagcagtgggttatcactttatataaagttaagctgtctgatgatatattggccctc
attgacaattttgaaaagagatatcttgccatcctgcagaatgagacagatatgataaat
gcacctcatttgtattcagcagccaatgatcttaaattgctcagcctatcaaaagaaaca
ctgatggactatattaagaagagaagtcttcacagaactactattagtgaagatgaaaca
attatggactttttcagtttgtgtgtaattaaacagactgcatggtatttgagtttcttt
ggcatccacgctgctcatctgtacattaacaagatatctcaagcgcttgagtgcttgaaa
tcaagattaggtgtgttgcagtcgctgattgaagattcacatgagaaagcagagagagaa
ataactaggtcacatcctttattatctgttatctacgagattttgcagccaaacaatgcc
aaaaatagtttgaaggttttgattgtcactgacagagttttttggaggccattaaagcat
ttgctgatgtccatggaaatatcatccagtgagcttcaagaatcttattccgacacaaat
caaccagatggatattacagtggcgatgttgcaaaagataaaacagattttctgctggtt
tcagaatgtgtattagttcctcatgaccatgtttctgcgtcttttccattcaacaagttc
agcatgatcttggaatatggaggttcctatggcatgtctagaatatcttcactttcccca
cagtctgctgtcttgcctcgacttcacttcttgaaggttgatctggataactttggtgct
tgcaaagcactttgtgaaggttttggcatgactaaatactttgactcgagcactgttgaa
gagtctcattcttctctgcgcccgggtgagattataaatttgcagaagttggaggagttg
ctgaattttgtgcccattagggacattagatcttcagaaactgcagacaaagtaaaagat
tgctgcatgcctctgccagtcccttgtacatcacatgtgcgcgaatctgagcagattcaa
cagggcatcttgcctttcgttgacagggtcattattgtgaacactcaaaatattgacaag
gacatgattgtatccagaaggagtatgtaccaaaagattctcgcactggagaaaggagga
acacaggttgtagaacgtgatttggatcttcctgtggatatcattatcagctctgctatt
tgcttggtgtggtatgattgcagaaacataggaaaaaaagcaaccagcttagacgaagct
tcttcttgcttgcctttgtgcattgagaatattgccacagatatcttgacgtcgctaagc
tttaagtttggctgctgtatcttgctctttgagggagaaatcaacttcctttccactgta
atggaatcctcagatgggctctatgcagctgcagcaagcctgggaattgacctacagcta
ttctattcctattcattcgagtcaacgaatgaaattatattgggttgcatcagatgtgct
agtaagttgagtaactgcctgtatcccaaaatgcctgagtcagaaactcttgcagaatca
ttcctaacaaagtttccgtcaattaatccactgacagctcatgcaatactgtctgaagaa
atgctcattgagtttcttgagtgttcacatgacagcaggatccgtgcaattcaaaagtac
catgtttctgaagaaattgttgctctatttagtgctctgagcatatatggtgagcgggag
gattcaaaatctataatgacagactgctcctcttcagtatcttcaggtccagactcggac
aaatgtcatatgaaagtcggttctgacataaaacgacagaaatgcatagcaagccctccc
aaagtggatttaagaatggacaaattattgcattctgggataccaaacgaattacccaat
ggcatcatgcttcagttttccgagccatgtaatcattggatgtccaaacatctagatgaa
tttgatgagttagatatgcccgattcatctttttatgatttattcagtgataagcagaaa
cttaattcttctcgagttttgaagacatatggtgatgaaaactccaaagatgctttgata
ttagatgagtttaaaagttccagatcatccttgagtgagaaattgttcgggcaaaatctc
ggactggctacattgagcaatgtggatttatatcccaccaataaatctgagaaccatcgt
gatggctttataggtgaagtgattgacctcactcgtagtccattagtgtatgataaattt
tctattgacaatgttacatactcgtattttgcacctgaactggaaaaagattcaacaaga
aaacctaagattgtgagaagactatcttttgataaaagtgataaccctgctttccaagtg
gatgcaaaggtcaattctggttcagatgtacagacttttgtaaaagataggagacagagg
ttacaagaaaaaggtgatgaacgaaatgacctagaggaggaatcaatgcaaagatcagca
ggagtttccaagcagctagctttcaaagagggtctatcgcactatggtgcaacaccgctg
tcaaaagccattggttcagtccatccacagccaggatcaccctggacaatggagtttctt
aacagaattagggaaaagagcagactgcggcagcagtcccttccgtatgaagcaccttca
ccaggtaatgcacggaatacatcacgagctacaaagagaagaagtccatcgatccttgaa
tttttcaggtaccagggaagcagctcacatggtaaaatacctggaggaaagaggcagaaa
caatctatacgatcatcaagctcatccaagaatgagggtgcttcgactccttttcagcca
acgtggacaccaattgacaagagagctagacagactctatcttttgccatgaacggaagt
gaaaaccaagctaaactggtctggagtgatggcaatactcattgtccgagcaaaaaattt
cagaatcatttttga
DBGET
integrated database retrieval system
