Tripterygium wilfordii (thunder duke vine): 120005617
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Entry
120005617 CDS
T07256
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03013
Nucleocytoplasmic transport
twl03015
mRNA surveillance pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120005617
09122 Translation
03013 Nucleocytoplasmic transport
120005617
03015 mRNA surveillance pathway
120005617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120005617
03041 Spliceosome [BR:
twl03041
]
120005617
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120005617
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120005617
Spliceosome [BR:
twl03041
]
Complex C
Other components
EJC/TREX
120005617
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120005617
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
AAA_22
Motif
Other DBs
NCBI-GeneID:
120005617
NCBI-ProteinID:
XP_038711292
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All DBs
Position
9:complement(14320846..14326407)
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AA seq
428 aa
AA seq
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MGESRENEAYEEELLDYEEEEEKAPDSVGAKANGEAAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSALQQIDSGATGVTALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKSHKDLLKNECLQIVVGTPGRILA
LARDKDLSLKEVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSSYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatcaagggagaacgaagcatacgaggaggagcttctcgactatgaagaagag
gaagagaaagccccggactcggtcggtgccaaagctaatggcgaagctgccaaaaagggc
tatgttggaatacacagttcgggattcagagacttcctcctgaagccagagctcctccga
gctattgtggattcaggatttgagcatccttctgaagtgcaacatgagtgtattcctcaa
gccatcctgggcatggatgtcatctgccaagcgaaatcgggaatgggaaagactgctgtt
ttcgtgctttctgccttgcagcaaattgattcgggtgcaactggtgttactgctcttgtt
ttatgccacacaagagagttggcttatcagatttgtcatgagttcgagaggtttagtacc
tacttgcctgatatcaaagttgctgtcttttatggtggtgtcaatatcaagagtcacaaa
gatttactgaagaatgaatgcctccaaattgttgttgggacacccggaaggattttggca
ttggctagagacaaagacctttcgttgaaggaagtgaggcatttcatccttgacgaatgt
gacaagatgctcgaatcacttgacatgagaagagatgtacaggagattttcaaaatgacc
cctcatgacaagcaagttatgatgttttctgctacgcttagcaaagatatccgtccagtt
tgcaagaaattcatgcaagatccaatggaaatttatgttgatgacgaggccaagttaacc
cttcatggtcttgtacagcactacatcaaactgagtgagttggagaagaatcgcaagttg
aatgaccttcttgacgcattggactttaatcaagttgtcatctttgtcaagagtgtgaac
agagcggccgagctgaacaagttactggtggagtgtaatttcccttcaatatgcatccat
tcaggcatgtcgcaagaagaaagattgatgaggtacaagggtttcaaggagggtcataaa
aggattcttgtagctactgatttggttggtagagggattgatattgaacgtgtcaacatc
gtcatcaactatgacatgccggattctgctgatacttacctgcatagggttggtagagct
ggtaggtttggcacaaagggtctggcaataacgtttgtctcctcagcttcagactctgat
gttcttaatcaagttcaagagaggtttgaggtagatataaaggagcttcctgagcaaatt
gatacctcttcatacatgccgtcatag
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