Tripterygium wilfordii (thunder duke vine): 120005760
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Entry
120005760 CDS
T07256
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120005760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120005760
03041 Spliceosome [BR:
twl03041
]
120005760
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120005760
Spliceosome [BR:
twl03041
]
Complex B
Other components
Prp19-related factors
120005760
Complex C
120005760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
PPR
NRDE-2
Motif
Other DBs
NCBI-GeneID:
120005760
NCBI-ProteinID:
XP_038711504
LinkDB
All DBs
Position
9:1735220..1741323
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AA seq
913 aa
AA seq
DB search
MAIPMEFYPAEDDLLYEEELLRNPFSLKLWWRYLVARADAPFRRRFIIYERALRALPGSY
KLWHAYLRERLELVRNLPINHSQYETLNNTFERALVTMHKMPRIWIMYLLSLTEQRLITK
TRQTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSSLWQEAAERLASVLNDDRFYSIKGKTKHRLWLELCDLLTRHAKDVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLLEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
AHKMETLDLSDGEDEDDEENGFDENEDVRLDVNMSVAKFERRILHGFWLHDDNDVDLRLA
RLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTFTEAVRTVDPMKAVG
KPHTLWVAFAKLYESHKDIVNTRVIFDKAVQVNYKTVDNLASVWCEWAEMELRHKNFKVA
LELMSRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWAFYVDLEESLGTLESTRAVYER
ILDLRIATPQMIINYALLLEEHKYFEDAFKIYERGVKIFKYPHVKDIWVTYLSKFVKRYK
KTKLERARELFEHAVEMAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKL
SMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKIMCLKYAELEKNLGEIDRARGIY
VFASQFADPRSDAEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
DQRLSIDDAKDKLKQAGLPEDEMAALERQLAPAADNATAKDGSRKVGFVSAGVESQSNAN
QEDIELPEESDSEEDEKIEIAQKDVPSAVFGGLARKREEIDKDGVGDDAAAAANKDGESR
LGALERIKRQKLG
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccgatggagttttatccagctgaagatgatctactctacgaggaggagctt
ttgcgcaacccatttagtctgaagctatggtggcgctacctggtcgctcgcgcggatgct
ccgttcaggagacgattcattatctacgagcgtgcacttagagccttacccggtagctac
aagctctggcacgcctacctccgtgagcgcctcgagttggtgaggaacctacctatcaac
cactcgcagtacgagacgctaaacaacactttcgagagagctttggtaaccatgcataag
atgccccggatttggataatgtacttgctgagtctaacagagcagaggctaattacgaag
actcggcagacctttgatagggcattatgtgccctgcctgtgacccaacacgataggatt
tgggagccgtatttggtgtttgttagccaaaaaggcatcccaatagagacttcgcttagg
gtttataggaggtacttgaagtatgatcccagccatattgaggattttatagagtttttg
gtgaattcgagtctttggcaagaggctgccgaaagattagcttctgtgctgaatgatgac
cggttttattccattaaggggaaaacaaagcataggctgtggttagagttgtgtgatctg
ctcacgaggcatgccaaggatgtgtcaggtttgaatgttgatgcaataatcaggggtggg
atcaggaagttcacagatgaagtgggtaggctgtggacctctcttgcagattattacatt
aggaggggtttgctggagaaagcaagggatatatttgaggaaggcatgacaaccgtggtt
acagtaagagattttagtgttatttttgatgcgtactcacagttcgaagagagtatggtt
gcgcataaaatggaaactctggatttgagtgacggggaggatgaggatgatgaggaaaat
ggatttgatgaaaatgaagatgttaggttggatgtgaatatgtcggtggctaagtttgag
aggagaatacttcatggattttggctacatgatgataatgacgtagatctgagattggct
cgtctggaacatctcatggataggagaccagaattggccaacagtgtacttctgcgacaa
aatccacataatgttgaacagtggcaccgcagggtgaagctatttgagggcaatcccacg
aagcagattcttacctttactgaggcggtgaggactgttgatccaatgaaagccgtgggg
aagcctcatacattgtgggtggcttttgctaaattatatgagagccacaaagatatagtc
aatacaagagtgatttttgataaggcagtgcaggtgaactacaagactgtagataacctt
gcaagtgtctggtgtgagtgggcagaaatggagctgagacataaaaatttcaaagtagcc
ctagagctgatgagtcgggccacagcagaaccatcagtagaggttaaacgaagagtggct
gctgatggaaatgaaccagttcaaatgaagctgcacaagtctttgagactttgggccttc
tatgtggatttggaggagagtttgggcaccttggagtccacccgagctgtgtatgagcga
atacttgatttgagaatagcaacgcctcagatgataatcaattatgcattgcttttggaa
gagcacaaatactttgaagatgctttcaaaatatatgagcgaggcgtgaagatattcaag
tacccacacgtaaaagatatatgggttacttacctctcaaaatttgtcaagcggtacaag
aagacaaaactggaacgggcaagagagttgtttgaacatgctgttgaaatggctcccgcg
gatgctgtgaaaccattatatcttcaatatgctaagctggaggaggattacggtctagcc
aaacgagccatgaaggtttatgatcaagccactaaggctgttccaaataatgagaagctg
agcatgtatgaaatctacattgctcgtgcggctgagatttttggtgttccaaaaactcgg
gaaatatatgagcaagctattgaatctggtcttccagacaaagatgtcaagatcatgtgc
cttaagtacgctgagttagaaaagaacttgggagaaattgatcgtgcacgtggtatatat
gtattcgcctcccagtttgctgacccacgatcagatgctgagttttggaacaaatggcat
gagtttgaggtgcaacatggtaatgaagataccttccgggaaatgctgcgtattaaacgg
agtgtatctgcgagctatagccagacacactttattctgccagagtacctcatgcagaag
gatcagaggctcagcattgatgatgctaaagacaaattgaaacaggctggtttgcctgaa
gatgagatggctgctctagagaggcagttggcccctgcagcagataatgctactgctaaa
gatggcagcagaaaagtgggttttgtgagtgctggagtggagtcacagtctaatgcaaat
caggaagacattgagctgcctgaagaaagcgattctgaagaagatgagaagatagagatt
gcacagaaggatgttccatctgctgtctttggagggttagctcggaagcgggaagaaatt
gacaaggatggggtgggagatgatgctgctgctgcagcaaataaggatggtgaaagtcgt
cttggtgcccttgaaaggataaaaaggcaaaaactggggtaa
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