Tripterygium wilfordii (thunder duke vine): 120005818
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Entry
120005818 CDS
T07256
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
twl03041
]
120005818
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120005818
Spliceosome [BR:
twl03041
]
Complex C
Other components
Complex C specific factors
120005818
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
ResIII
AAA_7
nSTAND3
T2SSE
AAA_29
AAA_23
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
120005818
NCBI-ProteinID:
XP_038711592
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All DBs
Position
9:2253980..2270012
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AA seq
696 aa
AA seq
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MSMFWKPGTEKPQLLDDEEGGVLFLSSSQSSSSSSRYGYASMGKQRLPVHKYRTEILYLV
ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRAIACTQPRRLAVQAVASRVAEEMGVK
LGDEVGYTIRFEDITNTSVTMIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDI
LLGLLKKIQRRRPDLRLIISSATIDAKSISAFFQPSKRHRGLEGQGLSPRKEPAILSVEG
RGFDVRIHYVEEPIADYVRASVSTVMLIHEQEPPGDILVFLTGQDDIDAAAQLITEEART
VVKNSSGLIVLPLYSGISRAEQELVFSPTPRGKRKVVISTNIAETSVTLEGVVYVVDSGF
SKQRFYNPIPDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVNEMSAEGIPE
IQRSILVSCVIQLKALGIDNILGFDWPASPSPDAMIRALEVLYSLGVLDSDAKLTSPVGF
QVAEIPLDPMVSKIILSSNQLGCSEEIITIAAVLSVQSIWFSSRGAQKELDEAKLRFAAA
EGDHVTFLNVYKGFLQSGKSSQWCHKNFINYQAMKKVMEIREQLRKTAKKLGMVLKSCDN
DMEVVRKAITTGFFANACRLEAYSHNGMYKTLRGSQEVFIHPSSVLFRVNPKWVLYYSLV
STDRRYMRNVITIDPSWLTEIAPHFYHHQGPNPATH
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgttttggaaaccggggaccgagaaacctcaactcctagacgacgaagaaggc
ggtgttctttttctctcatcctctcagtcctcttcatcttcctcaaggtatggctatgcg
agcatggggaagcagaggctgcctgtgcacaagtacagaacggaaattctttatttagtg
gaaactcatgccactaccatcattgttggcgagactggtagcggcaaaacaactcagatt
cctcagtatcttaaggaagcaggttgggctgatggagggcgcgctattgcttgtacacaa
ccaagaagactggctgtccaggcagttgcttcaagggtggcggaagagatgggagtcaaa
cttggggatgaagttggttacaccattcgatttgaagatatcacaaatacaagtgtaact
atgataaagtttcttacagacggggttctacttagggaaatgatggatgatccccttttg
accaagtatagtgtcataatggtagatgaagcccatgagaggtccatttcaactgacatt
ttactgggtctcctgaaaaagatccaacggcgtagacctgatctgcgtctgattatctca
tctgctacaattgatgcaaaatcgatatctgctttcttccagcccagcaaaaggcatcgt
ggactagaaggtcagggacttagtcctaggaaggagcctgcaatcctatcagttgagggt
agagggtttgatgtaagaattcattatgttgaagagcccattgcagactatgttagggct
tctgtttcaacagttatgttgattcatgagcaggaaccccctggtgatattttggtattt
cttacgggtcaagatgatattgatgctgctgctcaattgattacggaggaagctcgaact
gttgtaaagaactcttctgggttaattgttttgcctttgtactctggaatttcacgtgca
gaacaggagctggtgttttcccccactcctagaggtaagaggaaagttgtgatatcaacc
aatatagcagaaacatcggtaactttggagggagttgtttatgttgttgacagtggattc
tcaaaacaaagattttacaacccgatccctgatattgaaaatctggtggtggcaccaata
tccaaggcatctgccagacaaagggctggtagggctggaagagttcgacctgggaagtgt
tataggctatatacggaagaatattttgttaacgaaatgtctgctgagggaattccagaa
atacagagatcaatccttgtttcttgtgtgattcagttaaaagctcttggcatagataat
atattgggctttgattggcctgcatctccatctcctgacgcaatgatccgagcacttgaa
gttctttattcactcggagtccttgatagtgatgctaagctcacttcaccagttggtttt
caagttgcagagattccgttggatccgatggtctcaaaaatcatcttatcttcaaaccaa
cttggatgttcggaggagataattaccattgcggctgttctctctgtacaatcaatttgg
ttttccagtcgaggagctcagaaggagctggatgaagccaaactgagatttgctgcagct
gagggtgaccatgttactttcctaaatgtttacaaagggtttcttcagtctggtaaatct
tcacagtggtgtcataagaactttataaactaccaggcaatgaagaaagttatggaaatt
agagaacaactaagaaagactgcaaaaaaattaggcatggtcttaaaatcttgtgacaat
gacatggaggtggtcagaaaggctataactactggtttttttgcaaatgcctgtcgctta
gaggcttatagtcacaatgggatgtacaagactctcaggggctctcaagaagtttttatt
catccctcatctgtattgttcagggttaaccccaagtgggttttatattattctctcgtc
tcaactgaccgacgatacatgcgcaatgttatcaccattgacccgtcttggctaacggag
attgccccacatttttaccatcatcaagggcccaatcctgctacccactaa
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