Tripterygium wilfordii (thunder duke vine): 120005820
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Entry
120005820 CDS
T07256
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120005820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
twl03021
]
120005820
03041 Spliceosome [BR:
twl03041
]
120005820
03036 Chromosome and associated proteins [BR:
twl03036
]
120005820
Transcription machinery [BR:
twl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120005820
Spliceosome [BR:
twl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120005820
Complex B
120005820
Complex C
U2 SnRNP specific factors
120005820
Chromosome and associated proteins [BR:
twl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120005820
TFTC complex
120005820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
120005820
NCBI-ProteinID:
XP_038711595
LinkDB
All DBs
Position
9:complement(4854840..4862024)
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQRPTGIVAAIYGNFSGGKVQEIVVARGKVLDLVRPDENGKLQTILSVEIFGA
VRSLAQFRLTGAQKDYIVVGSDSGRIVILDYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTVTYSICGVDCGFDNPI
FASIELDYSEADQDSTGQAASEAQKNLTYYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSRFFFLLQ
TEYGDIFKVTLEHDNDRVTELKIKYFDTIPVAAAMCVLKSGFLFAASEFGNHALYQFQAI
GEEEAVEASSGTLMETEEGFQPVFFQPRGLKNLVRIDQLESLMPIMDMKITNLFEEETPQ
IFTLCGRGPRSSLRILRTGLAISEMAVSQLPGVPSAVWTVKKNVTDEFDAYIVVSFANAT
LVLSIGETVEEVSESGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGTNRLQVVIALSGGELVYFVVDVTGNLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDIDDCMQILSVQSVSSAPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNRVLFRTMVDMVTGQLSDSRSGFLGLRAPKLFSIAVRGQRAMLCLSSRPWLGYIH
QGHFLLTPLSYESLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETVVSLRYTP
RKFVLQPKRKLLVMIESDQGVFTAEEREAAKKEYFEAAGMGENGNADNEQMENGGEDEDK
DDPLSDEQYGYPKAESDKWVSSIRVLDPRTSTTTCLLELQDNEAAFSICTVNFHDKEYGT
LLAVGTAKGLQFWPKRSLAAGFIHIYRFKDDGKTLELLHKTQVEGVPLALCQFQGRLLAG
IGPVLRLYDLGKKRLLRKCESKLFPNTIVNIHTYRDRIYVGDMQESFHFCKYRRDENQLY
IFADDCVPRWVTASLHIDFDTVAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIVQYHIGDVVTSLQKASLIPGGGESIIYGTVMGCLGAMLPFTSREDVDFFS
HLEMYMRQEHPPLCGRDHIAFRSAYFPVKDVIDGDLCEQLPTLPMDLQRKIADELDRTPG
EILKKLEEVRNKIV
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctatacaatctcactctccaacggcccaccggcatcgtcgccgcaatttatggc
aatttctccggcggcaaggtgcaggaaatcgttgtggctcgcgggaaggtcctcgacctg
gtccgtccagatgagaacggtaaactccagaccatactctccgtcgagatcttcggtgcc
gtccgttcactggcacagttccgcctcaccggcgcacagaaggactatatcgtagttggc
tctgactctggccgcatcgtcatccttgattacaataaggagaaaaacgtgtttgacaag
attcatcaggagactttcggcaagtctggctgccgccgcatcgtcccaggtcagtacctc
gccattgatcctaaagggagagccgtaatgattggagcttgtgaaaagcagaagcttgtc
tacgttcttaatagagatacagcggctaggttgactatatcatcgcccctggaggctcac
aagtcgcacactgtaacgtactccatttgtggggtagattgtggttttgataatcctata
tttgcttccatcgagctggattactctgaggccgaccaggattccactgggcaggccgcg
agtgaggctcaaaagaatttgacgtattacgagcttgatttggggcttaatcacgtgtca
aggaagtggtcggagcaggttgataatggtgccaacatgcttgtcacggtgcctggaggc
ggggatgggcctagtggagtgttagtctgtgcagagaatttcgtgatttataagaatcaa
gggcatcctgacgtacgagctgtgattccaaggagagcagatttgccggcagaacgtggg
gtactaatagtttctgcagctactcacaagcagaaatcaaggtttttcttccttttgcag
acggagtatggtgatatatttaaagttacattggagcatgataacgatagggttacagaa
cttaagattaaatattttgataccattcctgtggcagctgcaatgtgtgtgttgaagtcc
ggttttttgtttgccgcgtcagagtttggaaaccatgctttataccagtttcaggcaatt
ggggaggaagaggccgttgaggcctcatctgggacgttgatggaaactgaagagggtttc
cagcctgtgtttttccagccaagagggctaaagaaccttgtgaggattgatcaattggag
agtttgatgccaataatggatatgaaaattactaatctttttgaggaagaaacgcctcag
atattcacattatgtggacggggtcctagatcctccttaaggatattgagaactggtttg
gctatcagtgaaatggctgtctcacagcttccgggtgtccccagtgctgtttggactgtg
aaaaagaatgtcactgatgagtttgatgcgtacattgtggtgtcttttgcaaatgccact
cttgtgctctcgattggtgagacagttgaagaagttagtgaaagtggatttcttgatact
actccatcccttgcagtttctttgattggtgatgattctttgatgcaagttcaccctaat
ggtattaggcatataagggaagatggccgtattaatgagtggagaactcctggaaagagg
acaatcgtgaaggttggtaccaataggcttcaagtggttattgctttgagtggaggggag
cttgtatattttgtagtggatgtgactggaaatttgatggaggtagagaaacacgagatg
tctggagatgtggcttgtttggacattgctccagttcctgaaggaagacagagatctcgg
tttcttgctgttggttcatatgacaacacaattcgcatcttgtctttggatattgatgac
tgtatgcagattctcagcgtgcaaagtgtctcatcggctccagaatccctcctctttctg
gaagttcaggcatcagttggcggagaagatggtgcagatcacccagctagtcttttcctt
aatgctggtttgcagaatagagttctgtttagaacaatggtggatatggtgacaggtcag
ctctctgattctcgttccggatttctaggtttgagagccccaaagctcttttctattgct
gtgagaggtcagcgggcaatgctttgcttgtcgagtcgcccttggcttggctatattcac
cagggacattttctgctaactcccctatcttatgagagtcttgaatttgccgcctcgttt
tcatctgatcagtgtgcagaaggtgtggttgcggtagctggggatgcactaagggtgttt
actattgaaagattgggagagacatttaatgaaactgtagtatccttaaggtacactcct
aggaagtttgttcttcaacctaagaggaaattgttggtcatgatagaaagtgatcaagga
gtattcacagccgaagaacgtgaagctgcgaaaaaggagtattttgaggctgctggaatg
ggtgaaaatggaaatgcagacaatgagcaaatggagaatgggggagaagatgaggataaa
gatgaccccctctctgatgagcagtatggttacccaaaggcagagtcggacaagtgggta
tcttctattagagttctggacccaagaacatcaacaactacttgtctgctggagcttcag
gacaatgaagcagctttcagcatatgcactgttaattttcatgataaggaatatggaact
ctcttggctgttggtactgctaagggactgcaattttggcctaaaagaagtttagctgct
ggatttattcatatttacaggttcaaggatgatgggaaaaccctcgaacttttacacaag
acgcaagtggagggcgttcctcttgccttatgccagtttcaaggtagattacttgctgga
ataggacctgtcctgagattgtatgacttggggaaaaaacgattgctcaggaaatgtgag
agtaagcttttccccaacactattgttaatattcacacataccgagatcggatatatgta
ggcgatatgcaagagtcattccacttctgcaagtataggcgtgatgagaatcaactgtac
atttttgctgatgattgtgttcctagatgggtcactgcatcactccacatagattttgac
actgtagctggtgccgataagtttgggaatgtctattttgtgcggttgccacaggatgtt
tcagatgagatagaagaagacccaactggtggaaaaataaagtgggagcagggaaagctt
aatggagctcccaataaggtagaggagattgtacaataccatattggtgatgtggtcaca
agtttgcagaaggcatctctaattcccggtggtggggagagcatcatttatgggacagta
atggggtgcttgggagcaatgcttcccttcacctcccgagaagacgttgatttcttctct
cacctggagatgtacatgaggcaggaacacccacctttgtgtggcagagaccacatagcc
tttagatctgcttattttccggtgaaggatgtgattgatggggatttgtgtgagcagttg
ccaacactgcccatggatttgcagagaaaaatagcagacgaactggatagaactcctgga
gagatactgaagaaacttgaagaagtccgaaataagatcgtttaa
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