Tripterygium wilfordii (thunder duke vine): 120006237
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Entry
120006237 CDS
T07256
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120006237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
twl03019
]
120006237
Messenger RNA biogenesis [BR:
twl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120006237
mRNA degradation factors
5'-3' decay
Decapping complex
120006237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_EML_2
MbeB_N
Motif
Other DBs
NCBI-GeneID:
120006237
NCBI-ProteinID:
XP_038712127
LinkDB
All DBs
Position
9:complement(10829745..10841112)
Genome browser
AA seq
1417 aa
AA seq
DB search
MASPGNLNQQGGDGSGGGGFDVNKLFKPSSGPMIPPQPQSSTPNSTNLTTSPSFPPSSPS
FLTPSSSYPPPTGPYPYQQHLHPHYLPPYQPSPIQQQHLNPRPMSTFPAIPTAPPSPGPN
PSPGVPNLMAFFSNQNQQPDFLQPTLPFSSPSTPPPSSSTSSDFPISSAPPISHQQLHLH
QPTPMRMQSSKLPKGRHLIGDRVLYDIDVRMEGEAQPQLEVTPITKYNSDPGLVIGRQIA
VNRSYICYGLKPGAIRILNINTALRSLLRGHTQRVTDMAFFAEDVHLLASASIDGRVFIW
KINEGPDVEDKPQILGTAALALKIIVEGESVHPRVCWHPHKQEILMVAMGNRILKIDTLK
VGKGEAFSAEEPLNCPIHKLINGVQLVGKHDGEVTDLSMCQWMTTRSASASTDGTVKIWE
DRKAVPLAVLRPHDGHPVNSVTFLTASHRPDHIVLITGGSLNREMKIWTSTSEEGWLLPS
DTESWQCSQTLELKSSAETNAENAFFNQVVTLPRAGLLLLANAKKNAIYAVHIDYGPYPA
ATRMDYVAEFTVTMPILSLTGTSDSMPNGEHIVQVYCVQTQAIQQYALDLSQCLPPPLDN
MELDKTESNVSRALDSVGSDRSATLDASHGNQTTDMSVGTRTVQPNLAGSYESAPIASHP
EASLSGEVRSFLDIATKSMERKSKTSPSQNSAENIQTVASAVPLSPRLSGKSSGLRSPSN
NIEPSPLLNDHNGDQPVPNYSVNRESDTVKENAADVPSLVDNLMKDDKNVAQNDILMGSE
PPITFKNLTHLVTPSEILSRAPSPSESSQMSQGMNKEETKIQDVVVNKDAENAEVEVKVV
GETGATPINDRESSRESHINVGEKKEKSFYSQASDLSIQMVRDCCVENYIVGGSQQSNDG
GVTQAPERPSDNGEEEDRDIAKDVPENIGESENQMAVPQSTALATKGKRQKGKGSQVSGP
SSSSPSPFNSTDSSNEPGCSTGTQSGDAAMPQLLAMQNMLDQLVNMQKEMQKQMNTMVSV
PVNKEGKRLEASLGRSVEKVVKANADALWARFQEDNAKHEKLERDRTQQIINLITNSINK
DLPATFERTLKKELASVGPAVSRAITPSLEKCVNTAITESFQKGVGEKAVNQLEKSVNAK
LEATVARQLQVQFQTSGKQALQDAFRSNLEASIIPAFEMSCKTMFEQVDATFQTGLTKYV
TAAAQQFESLHSPLAMTLREAISSASSITRTLSGDLADGQRKLLAIAAAGANSKAGNPLV
TQLSNGPLASLHGMVEAPVDPTTELSRLIAERKYEEAFTQALHRSDVSIVSWLCSKVDMQ
GILAMKPIPLSQGVLLSLLQQLSCDISKETPKKLEWMYDVTFAINPADPLIARHVLAILD
QVSKALNNHLSLPTNSHSDITCIRLLMRAIADILKQL
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggaaatctgaatcaacaaggaggtgatggtagtggtggaggaggcttt
gatgtgaataagctcttcaagccctcctctgggcctatgataccaccgcagccacaatct
tcaactccgaactcaaccaatctcacaacttctccttcctttcctccttcttctccctct
tttctcactccatcgtcctcttatcctcctcccaccgggccctacccgtatcagcaacac
ctgcacccccactaccttcctccgtatcaaccttctccgattcaacaacagcacctaaac
cctagacccatgtctacttttcctgctatccctactgctcctccctctcctggccctaac
cccagtcctggtgtgcctaacttaatggccttcttctccaatcagaaccaacaacctgat
ttcctccagcctaccttacctttctcctcaccctcaactcctcccccttcttcttccact
tcttcggattttccaatctcttctgctcccccgatttctcatcagcagctgcaccttcac
cagcctacccccatgaggatgcagagcagcaaacttccaaaggggaggcatttgattggt
gaccgtgtgttgtatgatattgacgttagaatggaaggggaagcgcagccccagcttgaa
gtcactcccataaccaagtataactccgatccgggccttgttatcggccgccaaattgct
gttaacaggagctatatttgctatggacttaagcctggagctatcagaattctcaatatc
aacactgccttgagatccttgcttcgaggccatacccagagagtaacagatatggctttc
ttcgcggaggatgttcaccttttggcaagtgcaagtattgatgggcgggtgttcatttgg
aaaatcaatgaaggcccagatgtagaagacaagccccagattcttggtacggctgctctt
gccctgaagatcatagttgagggagaatcagtccatcctcgagtttgttggcatcctcat
aaacaagaaatcttgatggttgccatgggaaatcgtatattgaagattgacaccctaaaa
gttggaaaaggtgaagcattttcagccgaggaacctcttaattgtcccattcataagctg
ataaatggggtccagcttgttggtaaacatgatggtgaagtcactgatttgtcaatgtgc
caatggatgacaacccgttcagcttcagcttcaacagatggcacggtaaagatttgggaa
gatcgtaaggcagtgcccttggcagtcttgagaccacatgatggccatcctgtaaactct
gtgacgttcttaactgcttctcaccgccccgaccatattgttctcatcacaggggggtca
ttgaatcgggaaatgaagatatggacctccactagtgaggagggttggctgttgcctagt
gatactgaatcatggcagtgcagtcaaacactggaattgaagagttctgctgaaaccaat
gccgagaatgcgttctttaatcaagttgtgacattgccccgtgcaggactgcttctactg
gctaacgccaagaaaaatgccatatatgctgtgcatatagattatgggccatatccagct
gcaactcgcatggattatgtagccgaattcacagtcacaatgcccattctgagtcttact
ggaacaagtgatagcatgccgaatggagaacatattgtacaggtgtactgtgttcaaaca
caggctattcagcagtatgcgttggacttgtctcagtgcctgccaccacctttggacaac
atggagttagataaaacagaatctaatgtttctcgcgctcttgattctgttggttctgat
cgatctgctactttggatgcatctcatggaaatcaaaccactgacatgtctgtcggtact
cgaactgtccaaccaaatctggcaggcagctatgaaagtgctccaatagctagccatccg
gaagcctcactttctggtgaggttagaagtttcttggatattgctacaaaaagtatggaa
aggaaatcaaaaacttcaccatctcagaatagtgctgaaaatatccagactgttgcatcc
gctgttcctttgagtccaaggttatcaggcaagtcatctggtttaagaagtccatcgaat
aacattgagcccagtccattgctcaacgatcataatggtgaccagcctgttcctaattat
tcagttaaccgcgaaagtgatactgttaaagaaaatgcggcagatgtgccttccttagtt
gacaatctaatgaaagatgataagaatgtagcacaaaatgatatcttgatgggttctgaa
cctcctataacatttaaaaaccttacacacttggtaactccatcagagatattatccagg
gctccctcaccatctgagagttctcaaatgagtcaaggcatgaacaaggaggagacgaaa
attcaagatgtggttgtcaacaaagatgcagaaaatgctgaggttgaggtaaaagttgtt
ggagagacgggagccactccaattaatgatcgtgagtcttccagagagtctcatattaat
gttggggagaaaaaggagaaatccttctactctcaggcctcagatcttagcattcagatg
gtcagagattgttgtgttgaaaattatattgtggggggctcacaacagtctaatgatggt
ggtgtcactcaagcaccagagaggccatccgacaatggtgaggaggaagaccgagatata
gcaaaagatgttccagaaaatattggagagtctgaaaatcaaatggcagttccacagtcc
acagccctggctacaaaggggaaaaggcagaagggaaaaggttctcaagtatctggtcca
tcttccagttccccaagtcctttcaactctacagattcatcaaatgaaccaggttgtagt
actggtacccaatccggtgatgctgctatgccacagttattggcgatgcaaaatatgctt
gatcagttggtaaacatgcaaaaggaaatgcagaaacagatgaatacgatggtttctgtc
ccagtgaacaaagaaggtaaacgactagaagcatctctgggccgtagtgtagagaaagtt
gtcaaagccaatgctgatgcattgtgggctcgctttcaagaagataatgcaaaacatgag
aagttagagcgagaccgtacacaacagataataaatttgattaccaattccataaacaag
gacttgccagccacttttgagagaactttgaagaaagaattagcttcagtcgggcctgct
gtttctcgggctattactccatctctggagaaatgcgtaaatacagctattacagagtca
ttccagaaaggagtgggagagaaggcagtcaatcaactagagaaatcagttaatgcaaaa
cttgaagctacagttgccaggcaactccaagtgcagtttcaaacctctggcaagcaagct
cttcaggatgcatttaggtctaacttggaagcttcgattattcctgcatttgagatgtca
tgtaaaactatgtttgagcaagtcgatgcaacatttcaaacaggacttacaaaatatgta
actgctgctgcgcagcagtttgagtccttgcactctcccttggccatgactttgagggag
gccatcagttcagcatcatccataactcggaccttgagtggagacttggctgatggtcaa
cgtaagctgttagctattgctgctgcaggtgcaaactcaaaagcaggaaatcccctggta
actcaattgagtaatggcccactggctagtctacatgggatggttgaggcacctgtggat
ccaacaacagaactatctaggctgatagccgaacgtaaatacgaggaggcatttactcaa
gccttgcacagaagtgatgtctcaatagtttcgtggttatgttctaaggtcgatatgcag
gggattttggccatgaaaccaatccctctaagccaaggagttttgctgtccctactccag
caactgtcttgtgatataagcaaggaaacacctaaaaagctggaatggatgtatgatgta
acttttgccataaaccctgcagatccacttatagcgaggcacgtacttgccattcttgat
caggtttctaaggcattgaataatcacttgagcctgcctacaaactctcattctgatatc
acctgcatccgccttctcatgcgtgccatagctgatattctaaagcagctgtaa
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integrated database retrieval system
